Literature DB >> 8580314

A model for nucleotide sequences.

A M de Souza1, C Anteneodo.   

Abstract

We propose a model for generating "artificial" nucleotide sequences and, by the method of mapping those sequences onto a "DNA-walk," we analyze the presence of correlation between nucleotides. Artificial sequences are constructed considering, basically, interactions between first neighbors and between more distant units. We show that long-range correlations may be favored by the occurrence of intrastrand interactions, which give a nonlinear characteristic to the sequence.

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Year:  1995        PMID: 8580314      PMCID: PMC1236404          DOI: 10.1016/S0006-3495(95)80040-8

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  14 in total

1.  Correlations in intronless DNA.

Authors:  V V Prabhu; J M Claverie
Journal:  Nature       Date:  1992-10-29       Impact factor: 49.962

2.  Characterizing long-range correlations in DNA sequences from wavelet analysis.

Authors: 
Journal:  Phys Rev Lett       Date:  1995-04-17       Impact factor: 9.161

3.  Evolution of long-range fractal correlations and 1/f noise in DNA base sequences.

Authors: 
Journal:  Phys Rev Lett       Date:  1992-06-22       Impact factor: 9.161

4.  Uncorrelated DNA walks.

Authors:  S Nee
Journal:  Nature       Date:  1992-06-11       Impact factor: 49.962

5.  Long-range correlations in nucleotide sequences.

Authors:  C K Peng; S V Buldyrev; A L Goldberger; S Havlin; F Sciortino; M Simons; H E Stanley
Journal:  Nature       Date:  1992-03-12       Impact factor: 49.962

6.  Generalized Lévy-walk model for DNA nucleotide sequences.

Authors:  S V Buldyrev; A L Goldberger; S Havlin; M Simons; H E Stanley
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1993-06

7.  Long-range correlations in DNA.

Authors:  C A Chatzidimitriou-Dreismann; D Larhammar
Journal:  Nature       Date:  1993-01-21       Impact factor: 49.962

8.  Patchiness and correlations in DNA sequences.

Authors:  S Karlin; V Brendel
Journal:  Science       Date:  1993-01-29       Impact factor: 47.728

9.  Correlation approach to identify coding regions in DNA sequences.

Authors:  S M Ossadnik; S V Buldyrev; A L Goldberger; S Havlin; R N Mantegna; C K Peng; M Simons; H E Stanley
Journal:  Biophys J       Date:  1994-07       Impact factor: 4.033

10.  Nucleotide sequence of bacteriophage lambda DNA.

Authors:  F Sanger; A R Coulson; G F Hong; D F Hill; G B Petersen
Journal:  J Mol Biol       Date:  1982-12-25       Impact factor: 5.469

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