Literature DB >> 8576959

Genetic variation of recent Alu insertions in human populations.

M A Batzer1, S S Arcot, J W Phinney, M Alegria-Hartman, D H Kass, S M Milligan, C Kimpton, P Gill, M Hochmeister, P A Ioannou, R J Herrera, D A Boudreau, W D Scheer, B J Keats, P L Deininger, M Stoneking.   

Abstract

The Alu family of interspersed repeats is comprised of over 500,000 members which may be divided into discrete subfamilies based upon mutations held in common between members. Distinct subfamilies of Alu sequences have amplified within the human genome in recent evolutionary history. Several individual Alu family members have amplified so recently in human evolution that they are variable as to presence and absence at specific loci within different human populations. Here, we report on the distribution of six polymorphic Alu insertions in a survey of 563 individuals from 14 human population groups across several continents. Our results indicate that these polymorphic Alu insertions probably have an African origin and that there is a much smaller amount of genetic variation between European populations than that found between other population groups.

Entities:  

Mesh:

Year:  1996        PMID: 8576959     DOI: 10.1007/bf00163207

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  58 in total

1.  Amplification dynamics of human-specific (HS) Alu family members.

Authors:  M A Batzer; V A Gudi; J C Mena; D W Foltz; R J Herrera; P L Deininger
Journal:  Nucleic Acids Res       Date:  1991-07-11       Impact factor: 16.971

2.  Existence of at least three distinct Alu subfamilies.

Authors:  C Willard; H T Nguyen; C W Schmid
Journal:  J Mol Evol       Date:  1987       Impact factor: 2.395

3.  An Alu element retroposition in two families with Huntington disease defines a new active Alu subfamily.

Authors:  G B Hutchinson; S E Andrew; H McDonald; Y P Goldberg; R Graham; J M Rommens; M R Hayden
Journal:  Nucleic Acids Res       Date:  1993-07-25       Impact factor: 16.971

4.  A new subfamily of recently retroposed human Alu repeats.

Authors:  J Jurka
Journal:  Nucleic Acids Res       Date:  1993-05-11       Impact factor: 16.971

5.  mtDNA and the origin of Caucasians: identification of ancient Caucasian-specific haplogroups, one of which is prone to a recurrent somatic duplication in the D-loop region.

Authors:  A Torroni; M T Lott; M F Cabell; Y S Chen; L Lavergne; D C Wallace
Journal:  Am J Hum Genet       Date:  1994-10       Impact factor: 11.025

6.  Mitochondrial DNA and human evolution.

Authors:  R L Cann; M Stoneking; A C Wilson
Journal:  Nature       Date:  1987 Jan 1-7       Impact factor: 49.962

7.  A transpositionally and transcriptionally competent Alu subfamily.

Authors:  A G Matera; U Hellmann; C W Schmid
Journal:  Mol Cell Biol       Date:  1990-10       Impact factor: 4.272

8.  Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats.

Authors:  M A Batzer; C M Rubin; U Hellmann-Blumberg; M Alegria-Hartman; E P Leeflang; J D Stern; H A Bazan; T H Shaikh; P L Deininger; C W Schmid
Journal:  J Mol Biol       Date:  1995-03-31       Impact factor: 5.469

9.  Alu insertion polymorphism: a new type of marker for human population studies.

Authors:  N T Perna; M A Batzer; P L Deininger; M Stoneking
Journal:  Hum Biol       Date:  1992-10       Impact factor: 0.553

10.  High resolution of human evolutionary trees with polymorphic microsatellites.

Authors:  A M Bowcock; A Ruiz-Linares; J Tomfohrde; E Minch; J R Kidd; L L Cavalli-Sforza
Journal:  Nature       Date:  1994-03-31       Impact factor: 49.962

View more
  37 in total

1.  Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms.

Authors:  W S Watkins; C E Ricker; M J Bamshad; M L Carroll; S V Nguyen; M A Batzer; H C Harpending; A R Rogers; L B Jorde
Journal:  Am J Hum Genet       Date:  2001-02-15       Impact factor: 11.025

2.  Short tandem-repeat polymorphism/alu haplotype variation at the PLAT locus: implications for modern human origins.

Authors:  S A Tishkoff; A J Pakstis; M Stoneking; J R Kidd; G Destro-Bisol; A Sanjantila; R B Lu; A S Deinard; G Sirugo; T Jenkins; K K Kidd; A G Clark
Journal:  Am J Hum Genet       Date:  2000-09-13       Impact factor: 11.025

3.  Gene genealogies in geographically structured populations.

Authors:  B K Epperson
Journal:  Genetics       Date:  1999-06       Impact factor: 4.562

4.  Investigation of the Greek ancestry of populations from northern Pakistan.

Authors:  Atika Mansoor; Kehkashan Mazhar; Shagufta Khaliq; Abdul Hameed; Sadia Rehman; Saima Siddiqi; Myrto Papaioannou; L L Cavalli-Sforza; S Qasim Mehdi; Qasim Ayub
Journal:  Hum Genet       Date:  2004-02-25       Impact factor: 4.132

5.  Laboratory methods for the analysis of primate mobile elements.

Authors:  David A Ray; Kyudong Han; Jerilyn A Walker; Mark A Batzer
Journal:  Methods Mol Biol       Date:  2010

6.  Whole genome computational comparative genomics: A fruitful approach for ascertaining Alu insertion polymorphisms.

Authors:  Jianxin Wang; Lei Song; M Katherine Gonder; Sami Azrak; David A Ray; Mark A Batzer; Sarah A Tishkoff; Ping Liang
Journal:  Gene       Date:  2006-01-10       Impact factor: 3.688

7.  Polymorphic Alu insertions and the genetic structure of Iberian Basques.

Authors:  S García-Obregón; M A Alfonso-Sánchez; A M Pérez-Miranda; M M de Pancorbo; J A Peña
Journal:  J Hum Genet       Date:  2007-02-03       Impact factor: 3.172

8.  Population history of the Dniester-Carpathians: evidence from Alu markers.

Authors:  Alexander Varzari; Wolfgang Stephan; Vadim Stepanov; Florina Raicu; Radu Cojocaru; Yuri Roschin; Cristiana Glavce; Valentin Dergachev; Maria Spiridonova; Horst D Schmidt; Elisabeth Weiss
Journal:  J Hum Genet       Date:  2007-02-16       Impact factor: 3.172

9.  Detection of the ongoing sorting of ancestrally polymorphic SINEs toward fixation or loss in populations of two species of charr during speciation.

Authors:  M Hamada; N Takasaki; J D Reist; A L DeCicco; A Goto; N Okada
Journal:  Genetics       Date:  1998-09       Impact factor: 4.562

10.  Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes.

Authors:  Fereydoun Hormozdiari; Can Alkan; Evan E Eichler; S Cenk Sahinalp
Journal:  Genome Res       Date:  2009-05-15       Impact factor: 9.043

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.