Literature DB >> 8563296

A comparison of the temporal expressiveness of three database query methods.

A K Das1, M A Musen.   

Abstract

Time is a multifaceted phenomenon that developers of clinical decision-support systems can model at various levels of complexity. An unresolved issue for the design of clinical databases is whether the underlying data model should support interval semantics. In this paper, we examine whether interval-based operations are required for querying protocol-based conditions. We report on an analysis of a set of 256 eligibility criteria that the T-HELPER system uses to screen patients for enrollment in eight clinical-trial protocols for HIV disease. We consider three data-manipulation methods for temporal querying: the consensus query representation Arden Syntax, the commercial standard query language SQL, and the temporal query language TimeLineSQL (TLSQL). We compare the ability of these three query methods to express the eligibility criteria. Seventy nine percent of the 256 criteria require operations on time stamps. These temporal conditions comprise four distinct patterns, two of which use interval-based data. Our analysis indicates that the Arden Syntax can query the two non-interval patterns, which represent 54% of the temporal conditions. Timepoint comparisons formulated in SQL can instantiate the two non-interval patterns and one interval pattern, which encompass 96% of the temporal conditions. TLSQL, which supports an interval-based model of time, can express all four types of temporal patterns. Our results demonstrate that the T-HELPER system requires simple temporal operations for most protocol-based queries. Of the three approaches tested, TLSQL is the only query method that is sufficiently expressive for the temporal conditions in this system.

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Year:  1995        PMID: 8563296      PMCID: PMC2579109     

Source DB:  PubMed          Journal:  Proc Annu Symp Comput Appl Med Care        ISSN: 0195-4210


  9 in total

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Journal:  MD Comput       Date:  1992 Jul-Aug

2.  Doctors must review referral and business relationships.

Authors:  S E McGraw; N W Miller; N B Caesar
Journal:  N J Med       Date:  1992-02

3.  Extensions to the time-oriented database model to support temporal reasoning in medical expert systems.

Authors:  M G Kahn; L M Fagan; S Tu
Journal:  Methods Inf Med       Date:  1991       Impact factor: 2.176

4.  Modeling time in medical decision-support programs.

Authors:  M G Kahn
Journal:  Med Decis Making       Date:  1991 Oct-Dec       Impact factor: 2.583

5.  Evaluation of an SQL model of the HELP patient database.

Authors:  S M Huff; C L Berthelsen; T A Pryor; A S Dudley
Journal:  Proc Annu Symp Comput Appl Med Care       Date:  1991

6.  A temporal query system for protocol-directed decision support.

Authors:  A K Das; M A Musen
Journal:  Methods Inf Med       Date:  1994-10       Impact factor: 2.176

Review 7.  Rationale for the Arden Syntax.

Authors:  G Hripcsak; P Ludemann; T A Pryor; O B Wigertz; P D Clayton
Journal:  Comput Biomed Res       Date:  1994-08

8.  A methodology for determining patients' eligibility for clinical trials.

Authors:  S W Tu; C A Kemper; N M Lane; R W Carlson; M A Musen
Journal:  Methods Inf Med       Date:  1993-08       Impact factor: 2.176

9.  T-HELPER: automated support for community-based clinical research.

Authors:  M A Musen; R W Carlson; L M Fagan; S C Deresinski; E H Shortliffe
Journal:  Proc Annu Symp Comput Appl Med Care       Date:  1992
  9 in total
  11 in total

1.  Temporal expressiveness in querying a time-stamp--based clinical database.

Authors:  D J Nigrin; I S Kohane
Journal:  J Am Med Inform Assoc       Date:  2000 Mar-Apr       Impact factor: 4.497

2.  SYNCHRONUS: a reusable software module for temporal integration.

Authors:  Amar K Das; Mark A Musen
Journal:  Proc AMIA Symp       Date:  2002

3.  Multilayered temporal modeling for the clinical domain.

Authors:  Chen Lin; Dmitriy Dligach; Timothy A Miller; Steven Bethard; Guergana K Savova
Journal:  J Am Med Inform Assoc       Date:  2015-10-31       Impact factor: 4.497

4.  The evaluation of a temporal reasoning system in processing clinical discharge summaries.

Authors:  Li Zhou; Simon Parsons; George Hripcsak
Journal:  J Am Med Inform Assoc       Date:  2007-10-18       Impact factor: 4.497

5.  Evaluation of a flowchart-based EHR query system: a case study of RetroGuide.

Authors:  Vojtech Huser; Scott P Narus; Roberto A Rocha
Journal:  J Biomed Inform       Date:  2009-06-26       Impact factor: 6.317

6.  Data extraction and ad hoc query of an entity-attribute-value database.

Authors:  P M Nadkarni; C Brandt
Journal:  J Am Med Inform Assoc       Date:  1998 Nov-Dec       Impact factor: 4.497

7.  Data mining by clinicians.

Authors:  D J Nigrin; I S Kohane
Journal:  Proc AMIA Symp       Date:  1998

8.  Managing attribute--value clinical trials data using the ACT/DB client-server database system.

Authors:  P M Nadkarni; C Brandt; S Frawley; F G Sayward; R Einbinder; D Zelterman; L Schacter; P L Miller
Journal:  J Am Med Inform Assoc       Date:  1998 Mar-Apr       Impact factor: 4.497

9.  Representing CARE rules in a decision-theoretic formalism.

Authors:  M M Wagner; J M Overhage; E Rodriguez; G F Cooper
Journal:  Proc AMIA Annu Fall Symp       Date:  1996

10.  Database and knowledge base integration in decision support systems.

Authors:  B Johansson; N Shahsavar; H Ahlfeldt; O Wigertz
Journal:  Proc AMIA Annu Fall Symp       Date:  1996
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