Literature DB >> 8535241

Thermal stability determinants of chicken egg-white lysozyme core mutants: hydrophobicity, packing volume, and conserved buried water molecules.

P Shih1, D R Holland, J F Kirsch.   

Abstract

A series of 24 mutants was made in the buried core of chicken lysozyme at positions 40, 55, and 91. The midpoint temperature of thermal denaturation transition (Tm) values of these core constructs range from 60.9 to 77.3 degrees C, extending an earlier, more limited investigation on thermostability. The Tm values of variants containing conservative replacements for the wild type (WT) (Thr 40-Ile 55-Ser 91) triplet are linearly correlated with hydrophobicity (r = 0.81) and, to a lesser degree, with combined side-chain volume (r = 0.75). The X-ray structures of the S91A (1.9 A) and I55L/S91T/D101S (1.7 A) mutants are presented. The former amino acid change is found in duck and mammalian lysozymes, and the latter contains the most thermostable core triplet. A network of four conserved, buried water molecules is associated with the core. It is postulated that these water molecules significantly influence the mutational tolerance at the individual triplet positions. The pH dependence of Tm for the S91D mutant was compared with that of WT enzyme. The pKa of S91D is 1.2 units higher in the native than in the denatured state, corresponding to delta delta G298 = 1.7 kcal/mol. This is a low value for charge burial and likely reflects the moderating influence of the buried water molecules or a conformational change. Thermal and chemical denaturation and far UV CD spectroscopy were used to characterize the in vitro properties of I55T. This variant, which buries a hydroxyl group, has similar properties to those of the human amyloidogenic variant I56T.

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Year:  1995        PMID: 8535241      PMCID: PMC2142977          DOI: 10.1002/pro.5560041010

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  58 in total

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Journal:  Biophys Chem       Date:  1976-01       Impact factor: 2.352

2.  Engineering the hydrophobic pocket of carbonic anhydrase II.

Authors:  R S Alexander; S K Nair; D W Christianson
Journal:  Biochemistry       Date:  1991-11-19       Impact factor: 3.162

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Authors:  A Wlodawer; J Nachman; G L Gilliland; W Gallagher; C Woodward
Journal:  J Mol Biol       Date:  1987-12-05       Impact factor: 5.469

4.  Dependence of conformational stability on hydrophobicity of the amino acid residue in a series of variant proteins substituted at a unique position of tryptophan synthase alpha subunit.

Authors:  K Yutani; K Ogasahara; T Tsujita; Y Sugino
Journal:  Proc Natl Acad Sci U S A       Date:  1987-07       Impact factor: 11.205

5.  Thermodynamics of the denaturation of lysozyme by guanidine hydrochloride. I. Depdendence on pH at 25 degrees.

Authors:  K C Aune; C Tanford
Journal:  Biochemistry       Date:  1969-11       Impact factor: 3.162

Review 6.  What's new in lysozyme research? Always a model system, today as yesterday.

Authors:  P Jollès; J Jollès
Journal:  Mol Cell Biochem       Date:  1984-09       Impact factor: 3.396

7.  Solvent-accessible surfaces of proteins and nucleic acids.

Authors:  M L Connolly
Journal:  Science       Date:  1983-08-19       Impact factor: 47.728

8.  The role of packing interactions in stabilizing folded proteins.

Authors:  S F Sneddon; D J Tobias
Journal:  Biochemistry       Date:  1992-03-17       Impact factor: 3.162

9.  Energetics of complementary side-chain packing in a protein hydrophobic core.

Authors:  J T Kellis; K Nyberg; A R Fersht
Journal:  Biochemistry       Date:  1989-05-30       Impact factor: 3.162

10.  The role of a conserved internal water molecule and its associated hydrogen bond network in cytochrome c.

Authors:  A M Berghuis; J G Guillemette; G McLendon; F Sherman; M Smith; G D Brayer
Journal:  J Mol Biol       Date:  1994-02-25       Impact factor: 5.469

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  22 in total

1.  A near-native state on the slow refolding pathway of hen lysozyme.

Authors:  S K Kulkarni; A E Ashcroft; M Carey; D Masselos; C V Robinson; S E Radford
Journal:  Protein Sci       Date:  1999-01       Impact factor: 6.725

2.  Mutagenesis-based definitions and probes of residue burial in proteins.

Authors:  Kanika Bajaj; Purbani Chakrabarti; Raghavan Varadarajan
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-26       Impact factor: 11.205

3.  Prediction of protein thermostability with a direction- and distance-dependent knowledge-based potential.

Authors:  Christian Hoppe; Dietmar Schomburg
Journal:  Protein Sci       Date:  2005-09-09       Impact factor: 6.725

4.  NMR investigations on residue level unfolding thermodynamics in DLC8 dimer by temperature dependent native state hydrogen exchange.

Authors:  P M Krishna Mohan; Swagata Chakraborty; Ramakrishna V Hosur
Journal:  J Biomol NMR       Date:  2009-03-24       Impact factor: 2.835

5.  The equilibrium unfolding of Azotobacter vinelandii apoflavodoxin II occurs via a relatively stable folding intermediate.

Authors:  C P van Mierlo; W M van Dongen; F Vergeldt; W J van Berkel; E Steensma
Journal:  Protein Sci       Date:  1998-11       Impact factor: 6.725

6.  An effective thiol-reactive probe for differential scanning fluorimetry with a standard real-time polymerase chain reaction device.

Authors:  Lukas Hofmann; Sahil Gulati; Avery Sears; Phoebe L Stewart; Krzysztof Palczewski
Journal:  Anal Biochem       Date:  2016-02-04       Impact factor: 3.365

7.  High apparent dielectric constants in the interior of a protein reflect water penetration.

Authors:  J J Dwyer; A G Gittis; D A Karp; E E Lattman; D S Spencer; W E Stites; B García-Moreno E
Journal:  Biophys J       Date:  2000-09       Impact factor: 4.033

8.  Design and structural analysis of an engineered thermostable chicken lysozyme.

Authors:  P Shih; J F Kirsch
Journal:  Protein Sci       Date:  1995-10       Impact factor: 6.725

9.  Ortho-methylated 3-hydroxypyridines hinder hen egg-white lysozyme fibrillogenesis.

Authors:  Laura Mariño; Kris Pauwels; Rodrigo Casasnovas; Pilar Sanchis; Bartolomé Vilanova; Francisco Muñoz; Josefa Donoso; Miquel Adrover
Journal:  Sci Rep       Date:  2015-07-14       Impact factor: 4.379

10.  Cellular Chaperone Function of Intrinsically Disordered Dehydrin ERD14.

Authors:  Nikoletta Murvai; Lajos Kalmar; Beata Szabo; Eva Schad; András Micsonai; József Kardos; László Buday; Kyou-Hoon Han; Peter Tompa; Agnes Tantos
Journal:  Int J Mol Sci       Date:  2021-06-08       Impact factor: 5.923

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