Literature DB >> 8534805

Double-stranded DNA organization in bacteriophage heads: an alternative toroid-based model.

N V Hud1.   

Abstract

Studies of the organization of double-stranded DNA within bacteriophage heads during the past four decades have produced a wealth of data. However, despite the presentation of numerous models, the true organization of DNA within phage heads remains unresolved. The observations of toroidal DNA structures in electron micrographs of phage lysates have long been cited as support for the organization of DNA in a spool-like fashion. This particular model, like all other models, has not been found to be consistent will all available data. Recently we proposed that DNA within toroidal condensates produced in vitro is organized in a manner significantly different from that suggested by the spool model. This new toroid model has allowed the development of an alternative model for DNA organization within bacteriophage heads that is consistent with a wide range of biophysical data. Here we propose that bacteriophage DNA is packaged in a toroid that is folded into a highly compact structure.

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Year:  1995        PMID: 8534805      PMCID: PMC1236365          DOI: 10.1016/S0006-3495(95)80002-0

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  37 in total

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Journal:  Cell       Date:  1979-03       Impact factor: 41.582

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Journal:  Biochemistry       Date:  1979-05-29       Impact factor: 3.162

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Journal:  Biopolymers       Date:  1985-08       Impact factor: 2.505

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Authors:  S C Harrison
Journal:  J Mol Biol       Date:  1983-12-25       Impact factor: 5.469

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Journal:  Nature       Date:  1977-08-18       Impact factor: 49.962

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Journal:  J Mol Biol       Date:  1983-12-25       Impact factor: 5.469

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Authors:  J C Brown; W W Newcomb
Journal:  J Virol       Date:  1986-11       Impact factor: 5.103

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  21 in total

1.  DNA packaging and ejection forces in bacteriophage.

Authors:  J Kindt; S Tzlil; A Ben-Shaul; W M Gelbart
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-13       Impact factor: 11.205

2.  Cryoelectron microscopy of lambda phage DNA condensates in vitreous ice: the fine structure of DNA toroids.

Authors:  N V Hud; K H Downing
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-04       Impact factor: 11.205

3.  Knotting probability of DNA molecules confined in restricted volumes: DNA knotting in phage capsids.

Authors:  Javier Arsuaga; Mariel Vázquez; Sonia Trigueros; De Witt Sumners; Joaquim Roca
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

4.  Controlling the size of nanoscale toroidal DNA condensates with static curvature and ionic strength.

Authors:  Christine C Conwell; Igor D Vilfan; Nicholas V Hud
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-18       Impact factor: 11.205

5.  Role of DNA-DNA interactions on the structure and thermodynamics of bacteriophages Lambda and P4.

Authors:  Anton S Petrov; Stephen C Harvey
Journal:  J Struct Biol       Date:  2010-11-11       Impact factor: 2.867

6.  DNA packaging in bacteriophage: is twist important?

Authors:  Andrew James Spakowitz; Zhen-Gang Wang
Journal:  Biophys J       Date:  2005-04-01       Impact factor: 4.033

7.  DNA knots reveal a chiral organization of DNA in phage capsids.

Authors:  Javier Arsuaga; Mariel Vazquez; Paul McGuirk; Sonia Trigueros; De Witt Sumners; Joaquim Roca
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-15       Impact factor: 11.205

8.  Langevin dynamics simulations of genome packing in bacteriophage.

Authors:  Christopher Forrey; M Muthukumar
Journal:  Biophys J       Date:  2006-04-14       Impact factor: 4.033

9.  Structural changes of bacteriophage phi29 upon DNA packaging and release.

Authors:  Ye Xiang; Marc C Morais; Anthony J Battisti; Shelley Grimes; Paul J Jardine; Dwight L Anderson; Michael G Rossmann
Journal:  EMBO J       Date:  2006-10-19       Impact factor: 11.598

10.  The conformation of double-stranded DNA inside bacteriophages depends on capsid size and shape.

Authors:  Anton S Petrov; Mustafa Burak Boz; Stephen C Harvey
Journal:  J Struct Biol       Date:  2007-08-29       Impact factor: 2.867

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