Literature DB >> 8528765

Characterization and modeling of membrane proteins using sequence analysis.

R A Reithmeier1.   

Abstract

The current libraries of amino acid sequences of membrane proteins are a valuable resource for the analysis of elements common to these proteins. Multiple-sequence alignment techniques and the identification of conserved features of transmembrane segments have improved the prediction of membrane protein topology. Molecular modeling in combination with structural studies or site-directed mutagenesis is proving to be a powerful link between theory and experiment. Unfortunately, the number of high-resolution structures of intrinsic membrane proteins, although increased recently, presents a restricted and perhaps biased view of membrane protein structure.

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Year:  1995        PMID: 8528765     DOI: 10.1016/0959-440x(95)80034-4

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  34 in total

1.  The effect of peptide/lipid hydrophobic mismatch on the phase behavior of model membranes mimicking the lipid composition in Escherichia coli membranes.

Authors:  S Morein; R E Koeppe II; G Lindblom; B de Kruijff; J A Killian
Journal:  Biophys J       Date:  2000-05       Impact factor: 4.033

2.  Sequence-function analysis of the K+-selective family of ion channels using a comprehensive alignment and the KcsA channel structure.

Authors:  Robin T Shealy; Anuradha D Murphy; Rampriya Ramarathnam; Eric Jakobsson; Shankar Subramaniam
Journal:  Biophys J       Date:  2003-05       Impact factor: 4.033

3.  Membrane interface-interacting sequences within the ectodomain of the human immunodeficiency virus type 1 envelope glycoprotein: putative role during viral fusion.

Authors:  T Suárez; W R Gallaher; A Agirre; F M Goñi; J L Nieva
Journal:  J Virol       Date:  2000-09       Impact factor: 5.103

4.  Ionization, partitioning, and dynamics of tryptophan octyl ester: implications for membrane-bound tryptophan residues.

Authors:  A Chattopadhyay; S Mukherjee; R Rukmini; S S Rawat; S Sudha
Journal:  Biophys J       Date:  1997-08       Impact factor: 4.033

5.  Interfacial tryptophan residues: a role for the cation-pi effect?

Authors:  Frederic N R Petersen; Morten Ø Jensen; Claus H Nielsen
Journal:  Biophys J       Date:  2005-09-08       Impact factor: 4.033

6.  Dynamics of a membrane-bound tryptophan analog in environments of varying hydration: a fluorescence approach.

Authors:  Amitabha Chattopadhyay; Ajuna Arora; Devaki A Kelkar
Journal:  Eur Biophys J       Date:  2005-09-24       Impact factor: 1.733

7.  Membrane interfacial localization of aromatic amino acids and membrane protein function.

Authors:  Devaki A Kelkar; Amitabha Chattopadhyay
Journal:  J Biosci       Date:  2006-09       Impact factor: 1.826

8.  Invariance of single-file water mobility in gramicidin-like peptidic pores as function of pore length.

Authors:  Guillem Portella; Peter Pohl; Bert L de Groot
Journal:  Biophys J       Date:  2007-03-16       Impact factor: 4.033

9.  Importance of the membrane-perturbing properties of the membrane-proximal external region of human immunodeficiency virus type 1 gp41 to viral fusion.

Authors:  Sundaram A Vishwanathan; Eric Hunter
Journal:  J Virol       Date:  2008-03-19       Impact factor: 5.103

10.  Effects of tryptophan microenvironment, soluble domain, and vesicle size on the thermodynamics of membrane protein folding: lessons from the transmembrane protein OmpA.

Authors:  Katheryn M Sanchez; Jonathan E Gable; Diana E Schlamadinger; Judy E Kim
Journal:  Biochemistry       Date:  2008-12-02       Impact factor: 3.162

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