Literature DB >> 8481820

TREECON: a software package for the construction and drawing of evolutionary trees.

Y Van de Peer1, R De Wachter.   

Abstract

A package of programs (run by a management program called TREECON) was developed for the construction and drawing of evolutionary trees. The program MATRIX calculates dissimilarity values and can perform boostrap analysis on nucleic acid sequences. TREE implements different evolutionary tree constructing methods based on distance matrices. Because some of these methods produce unrooted evolutionary trees, a program ROOT places a root on the tree. Finally, the program DRAW draws the evolutionary tree, changes its size or topology, and produces drawings suitable for publication. Whereas, MATRIX is suited only for nucleic acids, the modules TREE, ROOT and DRAW are applicable to any kind of dissimilarity matrix. The programs run on IBM-compatible microcomputers using the DOS operating system.

Mesh:

Year:  1993        PMID: 8481820     DOI: 10.1093/bioinformatics/9.2.177

Source DB:  PubMed          Journal:  Comput Appl Biosci        ISSN: 0266-7061


  62 in total

1.  How microbial ancient DNA, found in association with human remains, can be interpreted.

Authors:  F Rollo; I Marota
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1999-01-29       Impact factor: 6.237

2.  Equine abortion associated with the Borrelia parkeri-B. turicatae tick-borne relapsing fever spirochete group.

Authors:  R L Walker; D H Read; D C Hayes; R W Nordhausen
Journal:  J Clin Microbiol       Date:  2002-04       Impact factor: 5.948

3.  Niche-partitioning of Prochlorococcus populations in a stratified water column in the eastern North Atlantic Ocean.

Authors:  N J West; D J Scanlan
Journal:  Appl Environ Microbiol       Date:  1999-06       Impact factor: 4.792

4.  Structure and function of the globin and globin gene from the Antarctic mollusc Yoldia eightsi.

Authors:  Sylvia Dewilde; Elisa Angelini; Laurent Kiger; Michael C Marden; Mariano Beltramini; Benedetto Salvato; Luc Moens
Journal:  Biochem J       Date:  2003-02-15       Impact factor: 3.857

5.  Dispersal and phylogenetic diversity of nonmarine picocyanobacteria, inferred from 16S rRNA gene and cpcBA-intergenic spacer sequence analyses.

Authors:  Nicholas D Crosbie; Matthias Pöckl; Thomas Weisse
Journal:  Appl Environ Microbiol       Date:  2003-09       Impact factor: 4.792

6.  Diversity of Kenyan soda lake alkaliphiles assessed by molecular methods.

Authors:  Helen C Rees; William D Grant; Brian E Jones; Shaun Heaphy
Journal:  Extremophiles       Date:  2003-10-29       Impact factor: 2.395

7.  Diversity and distribution of Frankia strains symbiotic with Ceanothus in California.

Authors:  Brian Oakley; Malcolm North; Jerry F Franklin; Brian P Hedlund; James T Staley
Journal:  Appl Environ Microbiol       Date:  2004-11       Impact factor: 4.792

8.  Diversity of peronosporomycete (oomycete) communities associated with the rhizosphere of different plant species.

Authors:  Jessica M Arcate; Mary Ann Karp; Eric B Nelson
Journal:  Microb Ecol       Date:  2006-01-03       Impact factor: 4.552

9.  Biochemical characteristics of chitosanase from the Indonesian Bacillus licheniformis MB-2.

Authors:  Chasanah Ekowati; Purwiyatno Hariyadi; Arief B Witarto; Jae Kwan Hwang; Maggy Thenawidjaja Suhartono
Journal:  Mol Biotechnol       Date:  2006-06       Impact factor: 2.695

10.  Otzi's last meals: DNA analysis of the intestinal content of the Neolithic glacier mummy from the Alps.

Authors:  Franco Rollo; Massimo Ubaldi; Luca Ermini; Isolina Marota
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-20       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.