Literature DB >> 8479906

A novel method for site specific introduction of single model oxidative DNA lesions into oligodeoxyribonucleotides.

Z Hatahet1, A A Purmal, S S Wallace.   

Abstract

Calf thymus terminal deoxynucleotidyl transferase was used to incorporate several products of oxidative base damage onto the 3' end of oligodeoxyribonucleotides. Under the defined conditions described in this report, single residues of dihydrothymine, beta-ureidoisobutyric acid, thymine glycol, urea, 7-hydro-8-oxoadenine, 7-hydro-8-oxoguanine, 5-hydroxycytosine and 5-hydroxyuracil were incorporated into oligodeoxyribonucleotides of different lengths. The reaction is both efficient and cost effective. The 3' termini of the reaction products were suitable substrates for ligation by phage T4 DNA ligase, facilitating greatly the construction of oligodeoxyribonucleotides containing unique and site specific oxidative DNA lesions.

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Year:  1993        PMID: 8479906      PMCID: PMC309363          DOI: 10.1093/nar/21.7.1563

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  22 in total

1.  Multiple roles of divalent cation in the terminal deoxynucleotidyltransferase reaction.

Authors:  L M Chang; F J Bollum
Journal:  J Biol Chem       Date:  1990-10-15       Impact factor: 5.157

2.  Mutation frequency and spectrum resulting from a single abasic site in a single-stranded vector.

Authors:  C W Lawrence; A Borden; S K Banerjee; J E LeClerc
Journal:  Nucleic Acids Res       Date:  1990-04-25       Impact factor: 16.971

3.  Comparison of polymerase insertion and extension kinetics of a series of O2-alkyldeoxythymidine triphosphates and O4-methyldeoxythymidine triphosphate.

Authors:  B Singer; F Chavez; S J Spengler; J T Kuśmierek; L Mendelman; M F Goodman
Journal:  Biochemistry       Date:  1989-02-21       Impact factor: 3.162

4.  8-oxoguanine (8-hydroxyguanine) DNA glycosylase and its substrate specificity.

Authors:  J Tchou; H Kasai; S Shibutani; M H Chung; J Laval; A P Grollman; S Nishimura
Journal:  Proc Natl Acad Sci U S A       Date:  1991-06-01       Impact factor: 11.205

5.  Mechanistic studies of ionizing radiation and oxidative mutagenesis: genetic effects of a single 8-hydroxyguanine (7-hydro-8-oxoguanine) residue inserted at a unique site in a viral genome.

Authors:  M L Wood; M Dizdaroglu; E Gajewski; J M Essigmann
Journal:  Biochemistry       Date:  1990-07-31       Impact factor: 3.162

6.  Structure and in vitro replication of DNA templates containing 7,8-dihydro-8-oxoadenine.

Authors:  W Guschlbauer; A M Duplaa; A Guy; R Téoule; G V Fazakerley
Journal:  Nucleic Acids Res       Date:  1991-04-25       Impact factor: 16.971

7.  Processing of DNA base damage by DNA polymerases. Dihydrothymine and beta-ureidoisobutyric acid as models for instructive and noninstructive lesions.

Authors:  H Ide; L A Petrullo; Z Hatahet; S S Wallace
Journal:  J Biol Chem       Date:  1991-01-25       Impact factor: 5.157

8.  8-Hydroxyguanine, an abundant form of oxidative DNA damage, causes G----T and A----C substitutions.

Authors:  K C Cheng; D S Cahill; H Kasai; S Nishimura; L A Loeb
Journal:  J Biol Chem       Date:  1992-01-05       Impact factor: 5.157

9.  CONVERSION OF MONO- AND OLIGODEOXYRIBONUCLEOTIDES TO 5-TRIPHOSPHATES.

Authors:  D E HOARD; D G OTT
Journal:  J Am Chem Soc       Date:  1965-04-20       Impact factor: 15.419

10.  NMR structural studies of the ionizing radiation adduct 7-hydro-8-oxodeoxyguanosine (8-oxo-7H-dG) opposite deoxyadenosine in a DNA duplex. 8-Oxo-7H-dG(syn).dA(anti) alignment at lesion site.

Authors:  M Kouchakdjian; V Bodepudi; S Shibutani; M Eisenberg; F Johnson; A P Grollman; D J Patel
Journal:  Biochemistry       Date:  1991-02-05       Impact factor: 3.162

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  9 in total

1.  A novel role for Escherichia coli endonuclease VIII in prevention of spontaneous G-->T transversions.

Authors:  J O Blaisdell; Z Hatahet; S S Wallace
Journal:  J Bacteriol       Date:  1999-10       Impact factor: 3.490

2.  Solid phase-supported thymine dimers for the construction of dimer-containing DNA by combined chemical and enzymatic synthesis: a potentially general method for the efficient incorporation of modified nucleotides into DNA.

Authors:  P Ordoukhanian; J S Taylor
Journal:  Nucleic Acids Res       Date:  1997-10-01       Impact factor: 16.971

3.  Multiply damaged sites in DNA: interactions with Escherichia coli endonucleases III and VIII.

Authors:  L Harrison; Z Hatahet; A A Purmal; S S Wallace
Journal:  Nucleic Acids Res       Date:  1998-02-15       Impact factor: 16.971

4.  Major oxidative products of cytosine, 5-hydroxycytosine and 5-hydroxyuracil, exhibit sequence context-dependent mispairing in vitro.

Authors:  A A Purmal; Y W Kow; S S Wallace
Journal:  Nucleic Acids Res       Date:  1994-01-11       Impact factor: 16.971

5.  In vitro ligation of oligodeoxynucleotides containing C8-oxidized purine lesions using bacteriophage T4 DNA ligase.

Authors:  Xiaobei Zhao; James G Muller; Mohan Halasyam; Sheila S David; Cynthia J Burrows
Journal:  Biochemistry       Date:  2007-02-27       Impact factor: 3.162

6.  A novel assay of 8-oxo-2'-deoxyguanosine 5'-triphosphate pyrophosphohydrolase (8-oxo-dGTPase) activity in cultured cells and its use for evaluation of cadmium(II) inhibition of this activity.

Authors:  K Bialkowski; K S Kasprzak
Journal:  Nucleic Acids Res       Date:  1998-07-01       Impact factor: 16.971

7.  The effects of the ring fragmentation product of thymidine C5-hydrate on phosphodiesterases and klenow (exo-) fragment.

Authors:  T J Matray; K J Haxton; M M Greenberg
Journal:  Nucleic Acids Res       Date:  1995-11-25       Impact factor: 16.971

8.  Substrate and mispairing properties of 5-formyl-2'-deoxyuridine 5'-triphosphate assessed by in vitro DNA polymerase reactions.

Authors:  M Yoshida; K Makino; H Morita; H Terato; Y Ohyama; H Ide
Journal:  Nucleic Acids Res       Date:  1997-04-15       Impact factor: 16.971

9.  APE1-dependent repair of DNA single-strand breaks containing 3'-end 8-oxoguanine.

Authors:  Jason L Parsons; Irina I Dianova; Grigory L Dianov
Journal:  Nucleic Acids Res       Date:  2005-04-14       Impact factor: 16.971

  9 in total

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