Literature DB >> 8473317

Lysine 87 in the beta subunit of tryptophan synthase that forms an internal aldimine with pyridoxal phosphate serves critical roles in transimination, catalysis, and product release.

Z Lu1, S Nagata, P McPhie, E W Miles.   

Abstract

This study provides valuable insights into the functions of the lysine residue that forms an internal aldimine with pyridoxal phosphate in the beta subunit of tryptophan synthase from Salmonella typhimurium. Our spectroscopic and kinetic studies demonstrate that a mutant alpha 2 beta 2 complex having beta subunit lysine 87 replaced by threonine forms external aldimines with several amino acids including L-serine, beta-chloro-1-alanine, L-tryptophan, and D-tryptophan. Because the rates of aldimine formation are very slow, we conclude that one role of lysine 87 in the wild type enzyme is to facilitate formation of external aldimines by transimination. Lysine 87 is an essential catalytic residue because the mutant alpha 2 beta 2 complex has no measurable activity in reactions catalyzed by the beta subunit and does not convert external aldimines to products. The mutant enzyme carries out two slow partial beta-elimination reactions: the conversion of beta-chloro-L-alanine and L-serine to enzyme-bound aminoacrylate. The reaction with L-serine is catalyzed by ammonia, which partially replaces the deleted epsilon-amino group. Lysine 87 is important for substrate and product release because L-serine, L-tryptophan, and aminoacrylate dissociate very slowly from the mutant alpha 2 beta 2 complex. Our ability to prepare very stable derivatives of the mutant alpha 2 beta 2 complex containing tightly bound aldimines with a substrate, a product, or a reaction intermediate provides valuable materials for ongoing x-ray crystallographic investigations and future kinetic analyses of the allosteric activation of the alpha subunit by beta subunit ligands.

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Year:  1993        PMID: 8473317

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  7 in total

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Authors:  J V Krishna Rao; J R Jagath; B Sharma; N Appaji Rao; H S Savithri
Journal:  Biochem J       Date:  1999-10-01       Impact factor: 3.857

Review 2.  Tryptophan synthase: a mine for enzymologists.

Authors:  Samanta Raboni; Stefano Bettati; Andrea Mozzarelli
Journal:  Cell Mol Life Sci       Date:  2009-04-22       Impact factor: 9.261

3.  Structure-function relationships in the hammerhead ribozyme probed by base rescue.

Authors:  A Peracchi; J Matulic-Adamic; S Wang; L Beigelman; D Herschlag
Journal:  RNA       Date:  1998-11       Impact factor: 4.942

4.  Structure of alanine racemase from Oenococcus oeni with bound pyridoxal 5'-phosphate.

Authors:  Kandavelu Palani; Stephen K Burley; Subramanyam Swaminathan
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-12-25

5.  Synechocystis PCC 6803 contains a single gene for the beta subunit of tryptophan synthase with strong homology to the trpB genes of Arabidopsis and maize (Zea mays L.).

Authors:  G P Zhao; R L Somerville; P R Chitnis
Journal:  Plant Physiol       Date:  1994-02       Impact factor: 8.340

6.  Aminolevulinate synthase: lysine 313 is not essential for binding the pyridoxal phosphate cofactor but is essential for catalysis.

Authors:  G C Ferreira; U Vajapey; O Hafez; G A Hunter; M J Barber
Journal:  Protein Sci       Date:  1995-05       Impact factor: 6.725

7.  Factors affecting the stereospecificity and catalytic efficiency of the tryptophan synthase-catalysed exchange of the pro-2R and pro-2S protons of glycine.

Authors:  J J Milne; J P Malthouse
Journal:  Biochem J       Date:  1995-11-01       Impact factor: 3.857

  7 in total

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