Literature DB >> 19387555

Tryptophan synthase: a mine for enzymologists.

Samanta Raboni1, Stefano Bettati, Andrea Mozzarelli.   

Abstract

Tryptophan synthase is a pyridoxal 5'-phosphate-dependent alpha(2)beta(2) complex catalyzing the last two steps of tryptophan biosynthesis in bacteria, plants and fungi. Structural, dynamic and functional studies, carried out over more than 40 years, have unveiled that: (1) alpha- and beta-active sites are separated by about 20 A and communicate via the selective stabilization of distinct conformational states, triggered by the chemical nature of individual catalytic intermediates and by allosteric ligands; (2) indole, formed at alpha-active site, is intramolecularly channeled to the beta-active site; and (3) naturally occurring as well as genetically generated mutants have allowed to pinpoint functional and regulatory roles for several individual amino acids. These key features have made tryptophan synthase a text-book case for the understanding of the interplay between chemistry and conformational energy landscapes.

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Year:  2009        PMID: 19387555     DOI: 10.1007/s00018-009-0028-0

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  94 in total

1.  Rational herbicide design by inhibition of tryptophan biosynthesis.

Authors:  J Finn; C Langevine; I Birk; J Birk; K Nickerson; S Rodaway
Journal:  Bioorg Med Chem Lett       Date:  1999-08-16       Impact factor: 2.823

2.  Microspectrophotometric studies on single crystals of the tryptophan synthase alpha 2 beta 2 complex demonstrate formation of enzyme-substrate intermediates.

Authors:  A Mozzarelli; A Peracchi; G L Rossi; S A Ahmed; E W Miles
Journal:  J Biol Chem       Date:  1989-09-25       Impact factor: 5.157

3.  Kinetic studies of tryptophan synthetase. Interaction of substrates with the B subunit.

Authors:  E J Faeder; G G Hammes
Journal:  Biochemistry       Date:  1970-10-13       Impact factor: 3.162

4.  The interconversion of E. coli tryptophan synthase intermediates is modulated by allosteric interactions.

Authors:  M F Dunn; V Agular; W F Drewe; K Houben; B Robustell; M Roy
Journal:  Indian J Biochem Biophys       Date:  1987-10       Impact factor: 1.918

5.  Stereoelectronic control of bond formation in Escherichia coli tryptophan synthase: substrate specificity and enzymatic synthesis of the novel amino acid dihydroisotryptophan.

Authors:  M Roy; S Keblawi; M F Dunn
Journal:  Biochemistry       Date:  1988-09-06       Impact factor: 3.162

6.  On the structural basis of the catalytic mechanism and the regulation of the alpha subunit of tryptophan synthase from Salmonella typhimurium and BX1 from maize, two evolutionarily related enzymes.

Authors:  Victor Kulik; Elisabeth Hartmann; Michael Weyand; Monika Frey; Alfons Gierl; Dimitri Niks; Michael F Dunn; Ilme Schlichting
Journal:  J Mol Biol       Date:  2005-09-23       Impact factor: 5.469

7.  Mechanism of activation of the tryptophan synthase alpha2beta2 complex. Solvent effects of the co-substrate beta-mercaptoethanol.

Authors:  S A Ahmed; P McPhie; E W Miles
Journal:  J Biol Chem       Date:  1996-11-15       Impact factor: 5.157

8.  Hydrostatic pressure affects the conformational equilibrium of Salmonella typhimurium tryptophan synthase.

Authors:  Robert S Phillips; Edith W Miles; Georg Holtermann; Roger S Goody
Journal:  Biochemistry       Date:  2005-05-31       Impact factor: 3.162

9.  Synthesis and characterization of allosteric probes of substrate channeling in the tryptophan synthase bienzyme complex.

Authors:  Huu Ngo; Rodney Harris; Novelle Kimmich; Patricia Casino; Dimitri Niks; Lars Blumenstein; Thomas Reinier Barends; Victor Kulik; Michael Weyand; Ilme Schlichting; Michael F Dunn
Journal:  Biochemistry       Date:  2007-06-09       Impact factor: 3.162

10.  Quantitative effects of allosteric ligands and mutations on conformational equilibria in Salmonella typhimurium tryptophan synthase.

Authors:  Robert S Phillips; Peter McPhie; Edith W Miles; Stéphane Marchal; Reinhard Lange
Journal:  Arch Biochem Biophys       Date:  2007-11-17       Impact factor: 4.013

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  30 in total

Review 1.  Allosteric regulation of substrate channeling and catalysis in the tryptophan synthase bienzyme complex.

Authors:  Michael F Dunn
Journal:  Arch Biochem Biophys       Date:  2012-02-02       Impact factor: 4.013

2.  Allostery and substrate channeling in the tryptophan synthase bienzyme complex: evidence for two subunit conformations and four quaternary states.

Authors:  Dimitri Niks; Eduardo Hilario; Adam Dierkers; Huu Ngo; Dan Borchardt; Thomas J Neubauer; Li Fan; Leonard J Mueller; Michael F Dunn
Journal:  Biochemistry       Date:  2013-09-06       Impact factor: 3.162

3.  Electrophilic aromatic substitution of a BN indole.

Authors:  Eric R Abbey; Lev N Zakharov; Shih-Yuan Liu
Journal:  J Am Chem Soc       Date:  2010-11-02       Impact factor: 15.419

Review 4.  Minireview: Gut microbiota: the neglected endocrine organ.

Authors:  Gerard Clarke; Roman M Stilling; Paul J Kennedy; Catherine Stanton; John F Cryan; Timothy G Dinan
Journal:  Mol Endocrinol       Date:  2014-06-03

5.  Indoleamine 2,3-dioxygenase 1 is a lung-specific innate immune defense mechanism that inhibits growth of Francisella tularensis tryptophan auxotrophs.

Authors:  Kaitian Peng; Denise M Monack
Journal:  Infect Immun       Date:  2010-04-12       Impact factor: 3.441

Review 6.  Controlling reaction specificity in pyridoxal phosphate enzymes.

Authors:  Michael D Toney
Journal:  Biochim Biophys Acta       Date:  2011-06-06

7.  Allosteric inhibitors of Mycobacterium tuberculosis tryptophan synthase.

Authors:  Karolina Michalska; Changsoo Chang; Natalia I Maltseva; Robert Jedrzejczak; Gregory T Robertson; Fabian Gusovsky; Patrick McCarren; Stuart L Schreiber; Partha P Nag; Andrzej Joachimiak
Journal:  Protein Sci       Date:  2020-01-20       Impact factor: 6.725

Review 8.  Irritable bowel syndrome: a microbiome-gut-brain axis disorder?

Authors:  Paul J Kennedy; John F Cryan; Timothy G Dinan; Gerard Clarke
Journal:  World J Gastroenterol       Date:  2014-10-21       Impact factor: 5.742

9.  The role of oligomerization and cooperative regulation in protein function: the case of tryptophan synthase.

Authors:  M Qaiser Fatmi; Chia-en A Chang
Journal:  PLoS Comput Biol       Date:  2010-11-11       Impact factor: 4.475

10.  PCR Mutagenesis, Cloning, Expression, Fast Protein Purification Protocols and Crystallization of the Wild Type and Mutant Forms of Tryptophan Synthase.

Authors:  Eduardo Hilario; Li Fan; Leonard J Mueller; Michael F Dunn
Journal:  J Vis Exp       Date:  2020-09-26       Impact factor: 1.355

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