Literature DB >> 8436264

The effects of central asymmetry on the propagation of palindromic DNA in bacteriophage lambda are consistent with cruciform extrusion in vivo.

A F Chalker1, E A Okely, A Davison, D R Leach.   

Abstract

The propagation of lambda phages carrying long perfect palindromes has been compared with that of phages carrying imperfect palindromes with small regions of central asymmetry. The perfect palindromes confer a more deleterious phenotype than those with central asymmetry and the severity of the phenotype declines with the length of asymmetry in the range from O to 27 base pairs. These results argue that a center-dependent reaction is involved in the phenotypic effects of palindromic DNA sequences, consistent with the idea that cruciform extrusion occurs in vivo.

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Year:  1993        PMID: 8436264      PMCID: PMC1205305     

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  28 in total

1.  Identification of sbcD mutations as cosuppressors of recBC that allow propagation of DNA palindromes in Escherichia coli K-12.

Authors:  F P Gibson; D R Leach; R G Lloyd
Journal:  J Bacteriol       Date:  1992-02       Impact factor: 3.490

2.  Replication of bacteriophage lambda DNA dependent on the function of host and viral genes. I. Interaction of red, gam and rec.

Authors:  L W Enquist; A Skalka
Journal:  J Mol Biol       Date:  1973-04-05       Impact factor: 5.469

3.  The pMTL nic- cloning vectors. I. Improved pUC polylinker regions to facilitate the use of sonicated DNA for nucleotide sequencing.

Authors:  S P Chambers; S E Prior; D A Barstow; N P Minton
Journal:  Gene       Date:  1988-08-15       Impact factor: 3.688

4.  Instability of palindromic DNA in Escherichia coli.

Authors:  J Collins
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1981

5.  In vivo consequences of plasmid topology.

Authors:  D M Lilley
Journal:  Nature       Date:  1981-07-23       Impact factor: 49.962

6.  Cruciform structures in palindromic DNA are favored by DNA supercoiling.

Authors:  K Mizuuchi; M Mizuuchi; M Gellert
Journal:  J Mol Biol       Date:  1982-04-05       Impact factor: 5.469

7.  Slow replication of palindrome-containing DNA.

Authors:  J C Lindsey; D R Leach
Journal:  J Mol Biol       Date:  1989-04-20       Impact factor: 5.469

8.  Formation of (dA-dT)n cruciforms in Escherichia coli cells under different environmental conditions.

Authors:  A Dayn; S Malkhosyan; D Duzhy; V Lyamichev; Y Panchenko; S Mirkin
Journal:  J Bacteriol       Date:  1991-04       Impact factor: 3.490

9.  Precise and nearly-precise excision of the symmetrical inverted repeats of Tn5; common features of recA-independent deletion events in Escherichia coli.

Authors:  J Collins; G Volckaert; P Nevers
Journal:  Gene       Date:  1982 Jul-Aug       Impact factor: 3.688

10.  Torsionally tuned cruciform and Z-DNA probes for measuring unrestrained supercoiling at specific sites in DNA of living cells.

Authors:  G X Zheng; T Kochel; R W Hoepfner; S E Timmons; R R Sinden
Journal:  J Mol Biol       Date:  1991-09-05       Impact factor: 5.469

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  5 in total

1.  Factors affecting inverted repeat stimulation of recombination and deletion in Saccharomyces cerevisiae.

Authors:  K S Lobachev; B M Shor; H T Tran; W Taylor; J D Keen; M A Resnick; D A Gordenin
Journal:  Genetics       Date:  1998-04       Impact factor: 4.562

2.  Junctions between repetitive DNAs on the PSR chromosome of Nasonia vitripennis: association of palindromes with recombination.

Authors:  K M Reed; L W Beukeboom; D G Eickbush; J H Werren
Journal:  J Mol Evol       Date:  1994-04       Impact factor: 2.395

3.  The distribution of inverted repeat sequences in the Saccharomyces cerevisiae genome.

Authors:  Eva M Strawbridge; Gary Benson; Yevgeniy Gelfand; Craig J Benham
Journal:  Curr Genet       Date:  2010-05-06       Impact factor: 3.886

Review 4.  Palindromes in DNA-A Risk for Genome Stability and Implications in Cancer.

Authors:  Marina Svetec Miklenić; Ivan Krešimir Svetec
Journal:  Int J Mol Sci       Date:  2021-03-11       Impact factor: 5.923

5.  Origin-Dependent Inverted-Repeat Amplification: Tests of a Model for Inverted DNA Amplification.

Authors:  Bonita J Brewer; Celia Payen; Sara C Di Rienzi; Megan M Higgins; Giang Ong; Maitreya J Dunham; M K Raghuraman
Journal:  PLoS Genet       Date:  2015-12-23       Impact factor: 5.917

  5 in total

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