Literature DB >> 8430314

The hydrolytic water molecule in trypsin, revealed by time-resolved Laue crystallography.

P T Singer1, A Smalås, R P Carty, W F Mangel, R M Sweet.   

Abstract

Crystals of bovine trypsin were acylated at the reactive residue, serine 195, to form the transiently stable p-guanidinobenzoate. Hydrolysis of this species was triggered in the crystals by a jump in pH. The hydrolysis was monitored by three-dimensional Laue crystallography, resulting in three x-ray diffraction structures, all from the same crystal and each representing approximately 5 seconds of x-ray exposure. The structures were analyzed at a nominal resolution of 1.8 angstroms and were of sufficient quality to reproduce subtle features in the electron-density maps for each of the structures. Comparison of the structures before and after the pH jump reveals that a water molecule has positioned itself to attack the acyl group in the initial step of the hydrolysis of this transient intermediate.

Entities:  

Mesh:

Substances:

Year:  1993        PMID: 8430314     DOI: 10.1126/science.8430314

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  8 in total

1.  Insights into the serine protease mechanism from atomic resolution structures of trypsin reaction intermediates.

Authors:  Evette S Radisky; Justin M Lee; Chia-Jung Karen Lu; Daniel E Koshland
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-24       Impact factor: 11.205

2.  Ordered water molecules as key allosteric mediators in a cooperative dimeric hemoglobin.

Authors:  W E Royer; A Pardanani; Q H Gibson; E S Peterson; J M Friedman
Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-10       Impact factor: 11.205

3.  Conformational flexibility in the catalytic triad revealed by the high-resolution crystal structure of Streptomyces erythraeus trypsin in an unliganded state.

Authors:  Elise Blankenship; Krishna Vukoti; Masaru Miyagi; David T Lodowski
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-02-22

4.  A stopped-flow apparatus for infrared spectroscopy of aqueous solutions.

Authors:  A J White; K Drabble; C W Wharton
Journal:  Biochem J       Date:  1995-03-15       Impact factor: 3.857

5.  Cluster analysis of consensus water sites in thrombin and trypsin shows conservation between serine proteases and contributions to ligand specificity.

Authors:  P C Sanschagrin; L A Kuhn
Journal:  Protein Sci       Date:  1998-10       Impact factor: 6.725

6.  Laue and monochromatic diffraction studies on catalysis in phosphorylase b crystals.

Authors:  E M Duke; S Wakatsuki; A Hadfield; L N Johnson
Journal:  Protein Sci       Date:  1994-08       Impact factor: 6.725

7.  Structure of a serine protease poised to resynthesize a peptide bond.

Authors:  Elena Zakharova; Martin P Horvath; David P Goldenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-19       Impact factor: 11.205

8.  Mechanism of Orlistat Hydrolysis by the Thioesterase of Human Fatty Acid Synthase.

Authors:  Valerie E Fako; Jian-Ting Zhang; Jing-Yuan Liu
Journal:  ACS Catal       Date:  2014-08-21       Impact factor: 13.084

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.