Literature DB >> 8430102

Pre-mRNA splicing within an assembled yeast spliceosome requires an RNA-dependent ATPase and ATP hydrolysis.

S H Kim1, R J Lin.   

Abstract

Unlike autocatalyzed self-splicing of group I or group II introns, the removal of pre-mRNA introns in vitro occurs in the spliceosome. The spliceosome is a multicomponent complex composed of pre-mRNA, small nuclear ribonucleoprotein particles, and protein factors. ATP is required for the assembly of the spliceosome and both transesterification reactions. An RNA-dependent ATPase, the product of the yeast PRP2 gene, has been shown to be involved in the first transesterification of pre-mRNA splicing but not in spliceosome assembly. By using ATP analogs, we show that hydrolysis of ATP, mediated through a PRP2-dependent step, is required for the first catalytic event of pre-mRNA splicing. Furthermore, by using a two-step purification procedure, we have isolated a PRP2-containing spliceosome within which the first transesterification readily occurs after the addition of ATP. No additional macromolecules were required. Our results suggest that PRP2 binds to the spliceosome, interacting with an unidentified RNA species in the spliceosome, hydrolyzing ATP and allowing splicing to proceed. We postulate that PRP2 may function to induce a conformational change within the spliceosome. Alternatively, PRP2 may be involved in a proofreading step prior to splicing.

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Year:  1993        PMID: 8430102      PMCID: PMC45775          DOI: 10.1073/pnas.90.3.888

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

Review 1.  Unscrambling the puzzle of biological machines: the importance of the details.

Authors:  B Alberts; R Miake-Lye
Journal:  Cell       Date:  1992-02-07       Impact factor: 41.582

2.  U4 small nuclear RNA dissociates from a yeast spliceosome and does not participate in the subsequent splicing reaction.

Authors:  S L Yean; R J Lin
Journal:  Mol Cell Biol       Date:  1991-11       Impact factor: 4.272

3.  A multicomponent complex is involved in the splicing of messenger RNA precursors.

Authors:  P J Grabowski; S R Seiler; P A Sharp
Journal:  Cell       Date:  1985-08       Impact factor: 41.582

Review 4.  The role of small nuclear ribonucleoprotein particles in pre-mRNA splicing.

Authors:  T Maniatis; R Reed
Journal:  Nature       Date:  1987 Feb 19-25       Impact factor: 49.962

Review 5.  Splicing of messenger RNA precursors.

Authors:  R A Padgett; P J Grabowski; M M Konarska; S Seiler; P A Sharp
Journal:  Annu Rev Biochem       Date:  1986       Impact factor: 23.643

6.  Splicing of messenger RNA precursors.

Authors:  P A Sharp
Journal:  Science       Date:  1987-02-13       Impact factor: 47.728

7.  Purification and visualization of native spliceosomes.

Authors:  R Reed; J Griffith; T Maniatis
Journal:  Cell       Date:  1988-06-17       Impact factor: 41.582

8.  Splicing of yeast nuclear pre-mRNA in vitro requires a functional 40S spliceosome and several extrinsic factors.

Authors:  R J Lin; A J Lustig; J Abelson
Journal:  Genes Dev       Date:  1987-03       Impact factor: 11.361

9.  Use of monoclonal antibodies as probes of simian virus 40 T antigen ATPase activity.

Authors:  R Clark; D P Lane; R Tjian
Journal:  J Biol Chem       Date:  1981-11-25       Impact factor: 5.157

10.  The purified yeast pre-mRNA splicing factor PRP2 is an RNA-dependent NTPase.

Authors:  S H Kim; J Smith; A Claude; R J Lin
Journal:  EMBO J       Date:  1992-06       Impact factor: 11.598

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  34 in total

1.  A mutation in a methionine tRNA gene suppresses the prp2-1 Ts mutation and causes a pre-mRNA splicing defect in Saccharomyces cerevisiae.

Authors:  D H Kim; G Edwalds-Gilbert; C Ren; R J Lin
Journal:  Genetics       Date:  1999-11       Impact factor: 4.562

2.  Contribution of DEAH-box protein DHX16 in human pre-mRNA splicing.

Authors:  Marieta Gencheva; Mitsuo Kato; Alain N S Newo; Ren-Jang Lin
Journal:  Biochem J       Date:  2010-07-01       Impact factor: 3.857

3.  Cloning of mDEAH9, a putative RNA helicase and mammalian homologue of Saccharomyces cerevisiae splicing factor Prp43.

Authors:  S Gee; S W Krauss; E Miller; K Aoyagi; J Arenas; J G Conboy
Journal:  Proc Natl Acad Sci U S A       Date:  1997-10-28       Impact factor: 11.205

4.  Prp43: An RNA helicase-like factor involved in spliceosome disassembly.

Authors:  J E Arenas; J N Abelson
Journal:  Proc Natl Acad Sci U S A       Date:  1997-10-28       Impact factor: 11.205

5.  Protein composition and electron microscopy structure of affinity-purified human spliceosomal B complexes isolated under physiological conditions.

Authors:  Jochen Deckert; Klaus Hartmuth; Daniel Boehringer; Nastaran Behzadnia; Cindy L Will; Berthold Kastner; Holger Stark; Henning Urlaub; Reinhard Lührmann
Journal:  Mol Cell Biol       Date:  2006-07       Impact factor: 4.272

6.  A novel splicing factor, Yju2, is associated with NTC and acts after Prp2 in promoting the first catalytic reaction of pre-mRNA splicing.

Authors:  Yen-Chi Liu; Hsin-Chou Chen; Nan-Ying Wu; Soo-Chen Cheng
Journal:  Mol Cell Biol       Date:  2007-05-21       Impact factor: 4.272

7.  Prp22, a DExH-box RNA helicase, plays two distinct roles in yeast pre-mRNA splicing.

Authors:  B Schwer; C H Gross
Journal:  EMBO J       Date:  1998-04-01       Impact factor: 11.598

8.  Progression through the spliceosome cycle requires Prp38p function for U4/U6 snRNA dissociation.

Authors:  J Xie; K Beickman; E Otte; B C Rymond
Journal:  EMBO J       Date:  1998-05-15       Impact factor: 11.598

9.  The DEAH-box protein PRP22 is an ATPase that mediates ATP-dependent mRNA release from the spliceosome and unwinds RNA duplexes.

Authors:  J D Wagner; E Jankowsky; M Company; A M Pyle; J N Abelson
Journal:  EMBO J       Date:  1998-05-15       Impact factor: 11.598

10.  Genetic studies of the PRP17 gene of Saccharomyces cerevisiae: a domain essential for function maps to a nonconserved region of the protein.

Authors:  V Seshadri; V C Vaidya; U Vijayraghavan
Journal:  Genetics       Date:  1996-05       Impact factor: 4.562

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