Literature DB >> 8411199

Compositional properties of coding sequences and mammalian phylogeny.

D Mouchiroud1, G Bernardi.   

Abstract

The compositional distributions of large DNA fragments reflect those of the isochores that make up vertebrate genomes and can provide novel phylogenetic insights in the case of mammalian genomes (see Sabeur et al. 1993). This approach has been complemented here by an analysis of the compositional patterns of coding sequences and their codon positions (which also reflect the isochore pattern) and by a comparison of the base compositions of codon positions from homologous genes in a number of pairs of species. The results obtained using these two approaches support the existence of a general compositional pattern for mammalian genomes and of a distinct pattern for Myomorpha. The other two "special" patterns identified in a megachiropteran and in pangolin could not be tested here.

Entities:  

Mesh:

Substances:

Year:  1993        PMID: 8411199     DOI: 10.1007/bf02407345

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  16 in total

1.  The distribution of genes in the human genome.

Authors:  D Mouchiroud; G D'Onofrio; B Aïssani; G Macaya; C Gautier; G Bernardi
Journal:  Gene       Date:  1991-04       Impact factor: 3.688

2.  Codon usage changes and sequence dissimilarity between human and rat.

Authors:  D Mouchiroud; C Gautier
Journal:  J Mol Evol       Date:  1990-08       Impact factor: 2.395

3.  Compositional transitions in the nuclear genomes of cold-blooded vertebrates.

Authors:  G Bernardi; G Bernardi
Journal:  J Mol Evol       Date:  1990-10       Impact factor: 2.395

4.  Compositional constraints and genome evolution.

Authors:  G Bernardi; G Bernardi
Journal:  J Mol Evol       Date:  1986       Impact factor: 2.395

Review 5.  The isochore organization of the human genome.

Authors:  G Bernardi
Journal:  Annu Rev Genet       Date:  1989       Impact factor: 16.830

6.  Fast and sensitive multiple sequence alignments on a microcomputer.

Authors:  D G Higgins; P M Sharp
Journal:  Comput Appl Biosci       Date:  1989-04

7.  Compositional compartmentalization and gene composition in the genome of vertebrates.

Authors:  D Mouchiroud; G Fichant; G Bernardi
Journal:  J Mol Evol       Date:  1987       Impact factor: 2.395

8.  The isochore patterns of mammalian genomes and their phylogenetic implications.

Authors:  G Sabeur; G Macaya; F Kadi; G Bernardi
Journal:  J Mol Evol       Date:  1993-08       Impact factor: 2.395

9.  ACNUC--a portable retrieval system for nucleic acid sequence databases: logical and physical designs and usage.

Authors:  M Gouy; C Gautier; M Attimonelli; C Lanave; G di Paola
Journal:  Comput Appl Biosci       Date:  1985-09

10.  Compositional patterns in the nuclear genome of cold-blooded vertebrates.

Authors:  G Bernardi; G Bernardi
Journal:  J Mol Evol       Date:  1990-10       Impact factor: 2.395

View more
  14 in total

1.  GC content evolution of the human and mouse genomes: insights from the study of processed pseudogenes in regions of different recombination rates.

Authors:  Adel Khelifi; Julien Meunier; Laurent Duret; Dominique Mouchiroud
Journal:  J Mol Evol       Date:  2006-04-28       Impact factor: 2.395

2.  The major compositional transitions in the vertebrate genome.

Authors:  G Bernardi; S Hughes; D Mouchiroud
Journal:  J Mol Evol       Date:  1997       Impact factor: 2.395

3.  Compositional mapping of mouse chromosomes and identification of the gene-rich regions.

Authors:  S Saccone; S Caccio; P Perani; L Andreozzi; A Rapisarda; S Motta; G Bernardi
Journal:  Chromosome Res       Date:  1997-08       Impact factor: 5.239

4.  Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores.

Authors:  L Duret; D Mouchiroud; C Gautier
Journal:  J Mol Evol       Date:  1995-03       Impact factor: 2.395

5.  Nonrandom frequency patterns of synonymous substitutions in homologous mammalian genes.

Authors:  S Cacciò; S Zoubak; G D'Onofrio; G Bernardi
Journal:  J Mol Evol       Date:  1995-03       Impact factor: 2.395

6.  Specific compositional patterns of synonymous positions in homologous mammalian genes.

Authors:  S Zoubak; G D'Onofrio; S Cacciò; G Bernardi; G Bernardi
Journal:  J Mol Evol       Date:  1995-03       Impact factor: 2.395

7.  The isochore patterns of mammalian genomes and their phylogenetic implications.

Authors:  G Sabeur; G Macaya; F Kadi; G Bernardi
Journal:  J Mol Evol       Date:  1993-08       Impact factor: 2.395

8.  HOVERGEN: a database of homologous vertebrate genes.

Authors:  L Duret; D Mouchiroud; M Gouy
Journal:  Nucleic Acids Res       Date:  1994-06-25       Impact factor: 16.971

9.  Single-copy sequence homology among the GC-richest isochores of the genomes from warm-blooded vertebrates.

Authors:  S Cacciò; P Perani; S Saccone; F Kadi; G Bernardi
Journal:  J Mol Evol       Date:  1994-10       Impact factor: 2.395

10.  Analysis of fine-scale mammalian evolutionary breakpoints provides new insight into their relation to genome organisation.

Authors:  Claire Lemaitre; Lamia Zaghloul; Marie-France Sagot; Christian Gautier; Alain Arneodo; Eric Tannier; Benjamin Audit
Journal:  BMC Genomics       Date:  2009-07-24       Impact factor: 3.969

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.