Literature DB >> 8408444

High-performance liquid chromatography to assess the effect of serum storage conditions on the detection of hepatitis C virus by the polymerase chain reaction.

C M Quan1, M Krajden, J Zhao, A W Chan.   

Abstract

The effect of various serum storage conditions on the detection of hepatitis C virus (HCV) by the polymerase chain reaction (PCR) was assessed. 50 microliters aliquots of serum from four HCV PCR positive patients were subjected, in triplicate, to: (a) storage at -20 degrees C for 1, 5, 10 days; (b) storage at room temperature (RT) for 1, 2, 7 days; (c) 1, 3, 5, and 10 successive freeze-thaw cycles; (d) incubation at 37 degrees C, and 56 degrees C for 1, 3, 24 h; and (e) storage in guanidium-thiocyanate extraction buffer at RT, and 4 degrees C for 1, 5, 10 days. PCR products were detected by agarose gel electrophoresis (AGE) and quantitatively by high-performance liquid chromatography (HPLC). Only storage in extraction buffer at RT for 5-10 days and incubation at 56 degrees C for 24 h appeared to result in a loss of > or = 50% of detectable HCV PCR product. Up to 10 successive freeze-thaw cycles, storage at -20 degrees C for up to 10 days or at RT for up to 7 days, storage in extraction buffer at RT for 1 day or at 4 degrees C for up to 10 days, and incubation at 37 degrees C for up to 24 h resulted in minimal PCR signal loss. HPLC was a reproducible method of detecting and quantitating HCV PCR products, and was more sensitive than AGE.

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Year:  1993        PMID: 8408444     DOI: 10.1016/0166-0934(93)90148-k

Source DB:  PubMed          Journal:  J Virol Methods        ISSN: 0166-0934            Impact factor:   2.014


  7 in total

1.  Quantitation and purification of polymerase chain reaction products by high-performance liquid chromatography.

Authors:  E D Katz
Journal:  Mol Biotechnol       Date:  1996-08       Impact factor: 2.695

2.  Assessment of hepatitis B virus DNA stability in serum by the Chiron Quantiplex branched-DNA assay.

Authors:  M Krajden; L Comanor; O Rifkin; A Grigoriew; J M Minor; G F Kapke
Journal:  J Clin Microbiol       Date:  1998-02       Impact factor: 5.948

3.  Stability of hepatitis C virus RNA in blood samples by TaqMan real-time PCR.

Authors:  Kenan Sener; Mehmet Yapar; Orhan Bedir; Cem Gül; Omer Coskun; Ayhan Kubar
Journal:  J Clin Lab Anal       Date:  2010       Impact factor: 2.352

4.  Persistent replication of human immunodeficiency virus type 1 despite treatment of pulmonary tuberculosis in dually infected subjects.

Authors:  Harriet Mayanja Kizza; Benigno Rodriguez; Miguel Quinones-Mateu; Muneer Mirza; Htin Aung; Belinda Yen-Lieberman; Colleen Starkey; Libby Horter; Pierre Peters; Joy Baseke; John L Johnson; Zahra Toossi
Journal:  Clin Diagn Lab Immunol       Date:  2005-11

5.  Detection of hepatitis C virus by PCR in second-generation enzyme immunoassay-seropositive blood donors by using matched pairs of fresh frozen plasma and pilot tube sera.

Authors:  M Krajden; J Zhao; C Bourke; V Scalia; P Gill; W Lau
Journal:  J Clin Microbiol       Date:  1996-09       Impact factor: 5.948

6.  Effect of multiple freeze-thaw cycles on hepatitis B virus DNA and hepatitis C virus RNA quantification as measured with branched-DNA technology.

Authors:  M Krajden; J M Minor; O Rifkin; L Comanor
Journal:  J Clin Microbiol       Date:  1999-06       Impact factor: 5.948

7.  Analytical variables influencing the HCV RNA determination by TaqMan real-time PCR in routine clinical laboratory practice.

Authors:  Abida Raza; Zameer Ali; Javaid Irfan; Shahnaz Murtaza; Samina Shakeel
Journal:  Mol Biol Rep       Date:  2012-02-12       Impact factor: 2.316

  7 in total

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