Literature DB >> 8387075

NMR spectroscopic properties (1H at 500 MHz) of deuterated* ribonucleotide-dimers ApU*, GpC*, partially deuterated 2'-deoxyribonucleotide-dimers d(TpA*), d(ApT*), d(GpC*) and their comparison with natural counterparts (1H-NMR window).

A Földesi1, F P Nilson, C Glemarec, C Gioeli, J Chattopadhyaya.   

Abstract

Pure 1'#,2',3',4'#,5',5''-2H6-ribonucleoside derivatives 10-14, 1'#,2',2'',3',4'#,5',5''-2H7-2'-deoxynucleoside blocks 15-18 and their natural-abundance counterparts were used to assemble partially deuterated ribonucleotide-dimers (* indicates deuteration at 1'#,2',3',4'#,5',5''(2H6)): ApU* 21, GpC* 22 and partially deuterated 2'-deoxyribonucleotide-dimers d(TpA*) 23, d(ApT*) 25, d(GpC*) 26 (* indicates deuteration at 1'#,2',2'',3',4'#,5',5''(2H7)) according to the procedure described by Földesi et al. (Tetrahedron, in press). These five partially deuterated oligonucleotides were subsequently compared with their corresponding natural-abundance counterparts by 500 MHz 1H-NMR spectroscopy to evaluate the actual NMR simplifications achieved in the non-deuterated part (1H-NMR window) as a result of specific deuterium incorporation. Detailed one-dimensional 1H-NMR (500 MHz), two-dimensional correlation spectra (DQF-COSY and TOCSY) and deuterium isotope effect on the chemical shifts of oligonucleotides have been presented.

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Year:  1993        PMID: 8387075     DOI: 10.1016/0165-022x(93)90018-j

Source DB:  PubMed          Journal:  J Biochem Biophys Methods        ISSN: 0165-022X


  4 in total

1.  Sugar conformation of a stereospecific 2'-R or 2'-S deuterium-labeled DNA decamer studied with proton-proton J coupling constants.

Authors:  C Kojima; E Kawashima; T Sekine; Y Ishido; A Ono; M Kainosho; Y Kyogoku
Journal:  J Biomol NMR       Date:  2001-01       Impact factor: 2.835

2.  The use of non-uniform deuterium labelling ['NMR-window'] to study the NMR structure of a 21mer RNA hairpin.

Authors:  A Földesi; S I Yamakage; F P Nilsson; T V Maltseva; J Chattopadhyaya
Journal:  Nucleic Acids Res       Date:  1996-04-01       Impact factor: 16.971

3.  The NMR structure of 31mer RNA domain of Escherichia coli RNase P RNA using its non-uniformly deuterium labelled counterpart [the 'NMR-window' concept].

Authors:  C Glemarec; J Kufel; A Földesi; T Maltseva; A Sandström; L A Kirsebom; J Chattopadhyaya
Journal:  Nucleic Acids Res       Date:  1996-06-01       Impact factor: 16.971

4.  Deuteriation of sugar protons simplify NMR assignments and structure determination of large oligonucleotide by the 1H-NMR window approach.

Authors:  S I Yamakage; T V Maltseva; F P Nilson; A Földesi; J Chattopadhyaya
Journal:  Nucleic Acids Res       Date:  1993-11-11       Impact factor: 16.971

  4 in total

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