Literature DB >> 8344527

Genetic analysis of a Pseudomonas locus encoding a pathway for biphenyl/polychlorinated biphenyl degradation.

B Hofer1, L D Eltis, D N Dowling, K N Timmis.   

Abstract

The cistronic organization of the bph locus, encoding a biphenyl/polychlorinated biphenyl (PCB) degradation pathway in Pseudomonas sp. LB400, has been elucidated. Seven structural genes, encoding biphenyl dioxygenase (bphA1A2A3A4), biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (bphB), biphenyl-2,3-diol-1,2-dioxygenase (bphC) and 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (bphD), have been located. The complete sequences of bphB, bphC and bphD are reported. Taken together with the data of Erickson and Mondello [J. Bacteriol. 174 (1992) 2903-2912], Pseudomonas sp. LB400 is now the first strain for which the sequences of all genes encoding the catabolism from biphenyls to benzoates have been determined. Comparisons of the deduced amino acid (aa) sequences of BphB, BphC and BphD with those of related proteins led to predictions about catalytically important aa residues. Six Bph have been detected and identified. Five of them could be obtained as the most abundant proteins when their genes were expressed in Escherichia coli.

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Year:  1993        PMID: 8344527     DOI: 10.1016/0378-1119(93)90345-4

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  51 in total

1.  All in the family: structural and evolutionary relationships among three modular proteins with diverse functions and variable assembly.

Authors:  M Bergdoll; L D Eltis; A D Cameron; P Dumas; J T Bolin
Journal:  Protein Sci       Date:  1998-08       Impact factor: 6.725

2.  Construction and characterization of two recombinant bacteria that grow on ortho- and para-substituted chlorobiphenyls.

Authors:  Y Hrywna; T V Tsoi; O V Maltseva; J F Quensen; J M Tiedje
Journal:  Appl Environ Microbiol       Date:  1999-05       Impact factor: 4.792

Review 3.  Biphenyl dioxygenases: functional versatilities and directed evolution.

Authors:  Kensuke Furukawa; Hikaru Suenaga; Masatoshi Goto
Journal:  J Bacteriol       Date:  2004-08       Impact factor: 3.490

4.  Biphenyl and benzoate metabolism in a genomic context: outlining genome-wide metabolic networks in Burkholderia xenovorans LB400.

Authors:  V J Denef; J Park; T V Tsoi; J-M Rouillard; H Zhang; J A Wibbenmeyer; W Verstraete; E Gulari; S A Hashsham; J M Tiedje
Journal:  Appl Environ Microbiol       Date:  2004-08       Impact factor: 4.792

5.  Cloning and expression of a phloretin hydrolase gene from Eubacterium ramulus and characterization of the recombinant enzyme.

Authors:  Lilian Schoefer; Annett Braune; Michael Blaut
Journal:  Appl Environ Microbiol       Date:  2004-10       Impact factor: 4.792

6.  Structural insight into the expanded PCB-degrading abilities of a biphenyl dioxygenase obtained by directed evolution.

Authors:  Pravindra Kumar; Mahmood Mohammadi; Jean-François Viger; Diane Barriault; Leticia Gomez-Gil; Lindsay D Eltis; Jeffrey T Bolin; Michel Sylvestre
Journal:  J Mol Biol       Date:  2010-11-10       Impact factor: 5.469

7.  Genetic and biochemical analyses of the tec operon suggest a route for evolution of chlorobenzene degradation genes.

Authors:  S Beil; K N Timmis; D H Pieper
Journal:  J Bacteriol       Date:  1999-01       Impact factor: 3.490

8.  Purification of 2,3-dihydroxybiphenyl 1,2-dioxygenase from Pseudomonas putida OU83 and characterization of the gene (bphC).

Authors:  A A Khan; R F Wang; M S Nawaz; W W Cao; C E Cerniglia
Journal:  Appl Environ Microbiol       Date:  1996-05       Impact factor: 4.792

9.  Conversion of chlorobiphenyls into phenylhexadienoates and benzoates by the enzymes of the upper pathway for polychlorobiphenyl degradation encoded by the bph locus of Pseudomonas sp. strain LB400.

Authors:  M Seeger; K N Timmis; B Hofer
Journal:  Appl Environ Microbiol       Date:  1995-07       Impact factor: 4.792

10.  Conversion of 3-chlorocatechol by various catechol 2,3-dioxygenases and sequence analysis of the chlorocatechol dioxygenase region of Pseudomonas putida GJ31.

Authors:  A E Mars; J Kingma; S R Kaschabek; W Reineke; D B Janssen
Journal:  J Bacteriol       Date:  1999-02       Impact factor: 3.490

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