Literature DB >> 8343584

Noncoded residues as building blocks in the design of specific secondary structures: symmetrically disubstituted glycines and beta-alanine.

B Di Blasio1, V Pavone, A Lombardi, C Pedone, E Benedetti.   

Abstract

Structural changes can be induced in a peptide by selective substitution of coded alpha-amino acid residues by noncoded alpha-amino acid residues and the consequent production of analogues with modified structure and conformational preferences. In this review article we summarize the solid state structural results and the conformational preferences of two classes of "building blocks": (a) the linear and cyclic symmetrically alpha, alpha-disubstituted glycines in which either two identical n-alkyl groups replace the hydrogen atoms of the glycine residue or a cyclic aliphatic side-chain system is formed by linking the two alpha-carbon side chains, respectively; and (b) the beta-alanine residue. Examples, whenever possible, of the use of these residues for the elucidation of the bioactive conformation in the appropriate biological systems will be given.

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Year:  1993        PMID: 8343584     DOI: 10.1002/bip.360330706

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  6 in total

1.  Integrating the intrinsic conformational preferences of noncoded α-amino acids modified at the peptide bond into the noncoded amino acids database.

Authors:  Guillem Revilla-López; Francisco Rodríguez-Ropero; David Curcó; Juan Torras; M Isabel Calaza; David Zanuy; Ana I Jiménez; Carlos Cativiela; Ruth Nussinov; Carlos Alemán
Journal:  Proteins       Date:  2011-04-12

2.  PAPQMD parametrization of molecular systems with cyclopropyl rings: conformational study of homopeptides constituted by 1-aminocyclopropane-1-carboxylic acid.

Authors:  C Alemán; J Casanovas; S E Galembeck
Journal:  J Comput Aided Mol Des       Date:  1998-05       Impact factor: 3.686

3.  Computational design of a β-peptide that targets transmembrane helices.

Authors:  Scott J Shandler; Ivan V Korendovych; David T Moore; Kathryn B Smith-Dupont; Craig N Streu; Rustem I Litvinov; Paul C Billings; Feng Gai; Joel S Bennett; William F DeGrado
Journal:  J Am Chem Soc       Date:  2011-07-22       Impact factor: 15.419

4.  Computational design of a self-assembling β-peptide oligomer.

Authors:  Ivan V Korendovych; Yong Ho Kim; Andrew H Ryan; James D Lear; William F Degrado; Scott J Shandler
Journal:  Org Lett       Date:  2010-10-14       Impact factor: 6.005

5.  Intrinsic conformational preferences of C(alpha,alpha)-dibenzylglycine.

Authors:  Jordi Casanovas; Ruth Nussinov; Carlos Alemán
Journal:  J Org Chem       Date:  2008-05-09       Impact factor: 4.354

6.  Discovery of Dipeptides as Potent Botulinum Neurotoxin A Light-Chain Inhibitors.

Authors:  Martin Amezcua; Ricardo S Cruz; Alex Ku; Wilfred Moran; Marcos E Ortega; Nicholas T Salzameda
Journal:  ACS Med Chem Lett       Date:  2021-01-27       Impact factor: 4.345

  6 in total

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