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Literature DB >> 8332524

The ribosomal database project.

N Larsen¹, G J Olsen, B L Maidak, M J McCaughey, R Overbeek, T J Macke, T L Marsh, C R Woese.

Abstract

The Ribosomal Database Project (RDP) is a curated database that offers ribosome data along with related programs and services. The offerings include phylogenetically ordered alignments of ribosomal RNA (rRNA) sequences, derived phylogenetic trees, rRNA secondary structure diagrams and various software packages for handling, analyzing and displaying alignments and trees. The data are available via ftp and electronic mail. Certain analytic services are also provided by the electronic mail server.

Entities: Gene

Mesh：

Substances：
RNA, Ribosomal

Year: 1993 PMID： 8332524 PMCID： PMC309730 DOI： 10.1093/nar/21.13.3021

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

5 in total

1. Compilation of small ribosomal subunit RNA sequences.

Authors: P De Rijk; J M Neefs; Y Van de Peer; R De Wachter
Journal: Nucleic Acids Res Date: 1992-05-11 Impact factor: 16.971

2. The EMBL Data Library.

Authors: D G Higgins; R Fuchs; P J Stoehr; G N Cameron
Journal: Nucleic Acids Res Date: 1992-05-11 Impact factor: 16.971

3. GenBank.

Authors: C Burks; M J Cinkosky; W M Fischer; P Gilna; J E Hayden; G M Keen; M Kelly; D Kristofferson; J Lawrence
Journal: Nucleic Acids Res Date: 1992-05-11 Impact factor: 16.971

4. Interactive analysis of phylogeny and character evolution using the computer program MacClade.

Authors: W P Maddison; D R Maddison
Journal: Folia Primatol (Basel) Date: 1989 Impact factor: 1.246

5. Evolutionary trees from DNA sequences: a maximum likelihood approach.

Authors: J Felsenstein
Journal: J Mol Evol Date: 1981 Impact factor: 2.395

5 in total

161 in total

1. Molecular phylogenetic analysis of archaeal intron-containing genes coding for rRNA obtained from a deep-subsurface geothermal water pool.

Authors: K Takai; K Horikoshi
Journal: Appl Environ Microbiol Date: 1999-12 Impact factor: 4.792

2. Genetic diversity of archaea in deep-sea hydrothermal vent environments.

Authors: K Takai; K Horikoshi
Journal: Genetics Date: 1999-08 Impact factor: 4.562

3. Population structure and phylogenetic characterization of marine benthic Archaea in deep-sea sediments.

Authors: C Vetriani; H W Jannasch; B J MacGregor; D A Stahl; A L Reysenbach
Journal: Appl Environ Microbiol Date: 1999-10 Impact factor: 4.792

4. Rapid detection and quantification of members of the archaeal community by quantitative PCR using fluorogenic probes.

Authors: K Takai; K Horikoshi
Journal: Appl Environ Microbiol Date: 2000-11 Impact factor: 4.792

5. Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys.

Authors: U Purkhold; A Pommerening-Röser; S Juretschko; M C Schmid; H P Koops; M Wagner
Journal: Appl Environ Microbiol Date: 2000-12 Impact factor: 4.792

The ribosomal database project.

1. Compilation of small ribosomal subunit RNA sequences.

2. The EMBL Data Library.

3. GenBank.

4. Interactive analysis of phylogeny and character evolution using the computer program MacClade.

5. Evolutionary trees from DNA sequences: a maximum likelihood approach.

1. Molecular phylogenetic analysis of archaeal intron-containing genes coding for rRNA obtained from a deep-subsurface geothermal water pool.

2. Genetic diversity of archaea in deep-sea hydrothermal vent environments.

3. Population structure and phylogenetic characterization of marine benthic Archaea in deep-sea sediments.

4. Rapid detection and quantification of members of the archaeal community by quantitative PCR using fluorogenic probes.

5. Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys.

6. The twilight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes.

7. Evolution of eukaryotic transcription: insights from the genome of Giardia lamblia.

8. Revised small subunit rRNA analysis provides further evidence that Foraminifera are related to Cercozoa.

9. Microbial diversity and heterogeneity in sandy subsurface soils.

10. Domain V of 23S rRNA contains all the structural elements necessary for recognition by the ErmE methyltransferase.