Literature DB >> 9251819

A myoglobin mutant designed to mimic the oxygen-avid Ascaris suum hemoglobin: elucidation of the distal hydrogen bonding network by solution NMR.

W Zhang1, F Cutruzzolá, C T Allocatelli, M Brunori, G N La Mar.   

Abstract

The solution 1H NMR structure of the active site and ligand dissociation rate for the cyanomet complex have been determined for a sperm whale myoglobin triple mutant Leu29(B10)-->Tyr, His64(E7)-->Gln, Thr67(E10)-->Arg that mimics the distal residue configuration of the oxygen-avid hemoglobin from Ascaris suum. A double mutant that retains Leu29(B10) was similarly investigated. Two-dimensional NMR analysis of the iron-induced dipolar shifts, together with the conserved proximal side structure for the two mutants, allowed the determination of the orientations of the paramagnetic susceptibility tensor for each complex. The resulting magnetic axes, together with paramagnetic relaxation and steady-state NOEs, led to a quantitative description of the distal residue orientations. The distal Tyr29(B10) in the triple mutant provides a strong hydrogen bond to the bound cyanide comparable to that provided by His64(E7) in wild-type myoglobin. The distal Gln64(E7) in the triple mutant is sufficiently close to the bound cyanide to severe as a hydrogen bond donor, but the angle is not consistent with a strong hydrogen bond. Dipolar contacts between the Arg67(E10) guanidinium group and the Gln64(E7) side chain in both mutants support a hydrogen-bond to the Gln64(E7) carbonyl group. The much lower oxygen affinity of this triple mutant relative to that of Ascaris hemoglobin is concluded to arise from side-chain orientations that do not allow hydrogen bonds between the Gln64(E7) side-chain NHs and both the ligand and Tyr29(B10) hydroxyl oxygen. Cyanide dissociation rates for the reduced cyanide complexes are virtually unaffected by the mutations and are consistent with a model of the rate-determining step as the intrinsically slow Fe-C bond breaking that is largely independent of any hydrogen bonds to the cyanide nitrogen.

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Year:  1997        PMID: 9251819      PMCID: PMC1180999          DOI: 10.1016/S0006-3495(97)78135-9

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  38 in total

1.  Rates of reaction of Ascaris haemoglobins with ligands.

Authors:  Q H Gibson; M H Smith
Journal:  Proc R Soc Lond B Biol Sci       Date:  1965-10-12

2.  The structure of Ascaris hemoglobin domain I at 2.2 A resolution: molecular features of oxygen avidity.

Authors:  J Yang; A P Kloek; D E Goldberg; F S Mathews
Journal:  Proc Natl Acad Sci U S A       Date:  1995-05-09       Impact factor: 11.205

3.  Neutron diffraction reveals oxygen-histidine hydrogen bond in oxymyoglobin.

Authors:  S E Phillips; B P Schoenborn
Journal:  Nature       Date:  1981-07-02       Impact factor: 49.962

4.  High-level expression of sperm whale myoglobin in Escherichia coli.

Authors:  B A Springer; S G Sligar
Journal:  Proc Natl Acad Sci U S A       Date:  1987-12       Impact factor: 11.205

5.  The role of the distal histidine in myoglobin and haemoglobin.

Authors:  J S Olson; A J Mathews; R J Rohlfs; B A Springer; K D Egeberg; S G Sligar; J Tame; J P Renaud; K Nagai
Journal:  Nature       Date:  1988-11-17       Impact factor: 49.962

6.  Assignment of resonances in the 1H nuclear magnetic resonance spectrum of the carbon monoxide complex of sperm whale myoglobin by phase-sensitive two-dimensional techniques.

Authors:  C Dalvit; P E Wright
Journal:  J Mol Biol       Date:  1987-03-20       Impact factor: 5.469

7.  Reaction of nitric oxide with heme proteins and model compounds of hemoglobin.

Authors:  V S Sharma; T G Traylor; R Gardiner; H Mizukami
Journal:  Biochemistry       Date:  1987-06-30       Impact factor: 3.162

8.  Structure of human oxyhaemoglobin at 2.1 A resolution.

Authors:  B Shaanan
Journal:  J Mol Biol       Date:  1983-11-25       Impact factor: 5.469

9.  X-ray structure and refinement of carbon-monoxy (Fe II)-myoglobin at 1.5 A resolution.

Authors:  J Kuriyan; S Wilz; M Karplus; G A Petsko
Journal:  J Mol Biol       Date:  1986-11-05       Impact factor: 5.469

10.  The amino acid sequence of elephant (Elephas maximus) myoglobin and the phylogeny of Proboscidea.

Authors:  H Dene; M Goodman; A E Romero-Herrera
Journal:  Proc R Soc Lond B Biol Sci       Date:  1980-02-13
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  4 in total

1.  The use of chemical shift temperature gradients to establish the paramagnetic susceptibility tensor orientation: implication for structure determination/refinement in paramagnetic metalloproteins.

Authors:  Z Xia; B D Nguyen; G N La Mar
Journal:  J Biomol NMR       Date:  2000-06       Impact factor: 2.835

2.  Structural dynamics of ligand diffusion in the protein matrix: A study on a new myoglobin mutant Y(B10) Q(E7) R(E10).

Authors:  M Brunori; F Cutruzzolà; C Savino; C Travaglini-Allocatelli; B Vallone; Q H Gibson
Journal:  Biophys J       Date:  1999-03       Impact factor: 4.033

3.  Tyrosine B10 triggers a heme propionate hydrogen bonding network loop with glutamine E7 moiety.

Authors:  Brenda J Ramos-Santana; Juan López-Garriga
Journal:  Biochem Biophys Res Commun       Date:  2012-07-15       Impact factor: 3.575

4.  Effects of active site mutations in haemoglobin I from Lucina pectinata: a molecular dynamic study.

Authors:  Eunice Ramirez; Anthony Cruz; Diana Rodriguez; Lilen Uchima; Ruth Pietri; Alberto Santana; Juan López-Garriga; Gustavo E López
Journal:  Mol Simul       Date:  2008-08-22       Impact factor: 2.178

  4 in total

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