Literature DB >> 8290607

Weak male-driven molecular evolution in rodents.

B H Chang1, L C Shimmin, S K Shyue, D Hewett-Emmett, W H Li.   

Abstract

In humans and rodents the male-to-female ratio of mutation rate (alpha m) has been suggested to be extremely large, so that the process of nucleotide substitution is almost completely male-driven. However, our sequence data from the last intron of the X chromosome-linked (Zfx) and Y chromosome-linked (Zfy) zinc finger protein genes suggest that alpha m is only approximately 2 in rodents with a 95% confidence interval from 1 to 3. Moreover, from published data on oogenesis and spermatogenesis we estimate the male-to-female ratio of the number of germ cell divisions per generation to be approximately 2 in rodents, confirming our estimate of alpha m and suggesting that errors in DNA replication are the primary source of mutation. As the estimated alpha m for rodents is only one-third of our previous estimate of approximately 6 for higher primates, there appear to be generation-time effects--i.e., alpha m decreases with decreasing generation time.

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Year:  1994        PMID: 8290607      PMCID: PMC43042          DOI: 10.1073/pnas.91.2.827

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  21 in total

1.  Duplication, deletion, and polymorphism in the sex-determining region of the mouse Y chromosome.

Authors:  G Mardon; R Mosher; C M Disteche; Y Nishioka; A McLaren; D C Page
Journal:  Science       Date:  1989-01-06       Impact factor: 47.728

2.  Neighboring base effects on substitution rates in pseudogenes.

Authors:  M Bulmer
Journal:  Mol Biol Evol       Date:  1986-07       Impact factor: 16.240

3.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

4.  Male-driven molecular evolution: a model and nucleotide sequence analysis.

Authors:  T Miyata; H Hayashida; K Kuma; K Mitsuyasu; T Yasunaga
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1987

5.  Mutation rates differ among regions of the mammalian genome.

Authors:  K H Wolfe; P M Sharp; W H Li
Journal:  Nature       Date:  1989-01-19       Impact factor: 49.962

6.  Estimation of evolutionary distance between nucleotide sequences.

Authors:  F Tajima; M Nei
Journal:  Mol Biol Evol       Date:  1984-04       Impact factor: 16.240

7.  An evaluation of the molecular clock hypothesis using mammalian DNA sequences.

Authors:  W H Li; M Tanimura; P M Sharp
Journal:  J Mol Evol       Date:  1987       Impact factor: 2.395

8.  A maximum likelihood estimate of the sex ratio of mutation rates in haemophilia A.

Authors:  R M Winter; E G Tuddenham; E Goldman; K B Matthews
Journal:  Hum Genet       Date:  1983       Impact factor: 4.132

9.  Evidence for higher rates of nucleotide substitution in rodents than in man.

Authors:  C I Wu; W H Li
Journal:  Proc Natl Acad Sci U S A       Date:  1985-03       Impact factor: 11.205

10.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

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  31 in total

1.  The causes of synonymous rate variation in the rodent genome. Can substitution rates be used to estimate the sex bias in mutation rate?

Authors:  N G Smith; L D Hurst
Journal:  Genetics       Date:  1999-06       Impact factor: 4.562

2.  Male-biased transmission of deleterious mutations to the progeny in Arabidopsis thaliana.

Authors:  Carrie-Ann Whittle; Mark O Johnston
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-24       Impact factor: 11.205

3.  Insertions and deletions are male biased too: a whole-genome analysis in rodents.

Authors:  Kateryna D Makova; Shan Yang; Francesca Chiaromonte
Journal:  Genome Res       Date:  2004-04       Impact factor: 9.043

Review 4.  Molecular clocks and explosive radiations.

Authors:  Lindell Bromham
Journal:  J Mol Evol       Date:  2003       Impact factor: 2.395

Review 5.  Genome analyses substantiate male mutation bias in many species.

Authors:  Melissa A Wilson Sayres; Kateryna D Makova
Journal:  Bioessays       Date:  2011-10-18       Impact factor: 4.345

6.  Size of the protein-coding genome and rate of molecular evolution.

Authors:  Zoran A Rajic; Gradimir M Jankovic; Ana Vidovic; Natasa M Milic; Dejan Skoric; Milorad Pavlovic; Vladimir Lazarevic
Journal:  J Hum Genet       Date:  2005-05-10       Impact factor: 3.172

7.  The scale of mutational variation in the murid genome.

Authors:  Daniel J Gaffney; Peter D Keightley
Journal:  Genome Res       Date:  2005-07-15       Impact factor: 9.043

Review 8.  Characteristics, causes and evolutionary consequences of male-biased mutation.

Authors:  Hans Ellegren
Journal:  Proc Biol Sci       Date:  2007-01-07       Impact factor: 5.349

9.  Sperm competition can drive a male-biased mutation rate.

Authors:  Justin P Blumenstiel
Journal:  J Theor Biol       Date:  2007-08-31       Impact factor: 2.691

10.  Contrasting rates of nucleotide substitution in the X-linked and Y-linked zinc finger genes.

Authors:  L C Shimmin; B H Chang; W H Li
Journal:  J Mol Evol       Date:  1994-12       Impact factor: 2.395

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