Literature DB >> 8282684

Molecular characterization of the promoter of osmY, an rpoS-dependent gene.

H H Yim1, R L Brems, M Villarejo.   

Abstract

The osmY gene, which encodes a periplasmic protein with an apparent M(r) of 22,000, is induced by both osmotic and growth phase signals. We demonstrate here that osmY expression is regulated at the level of transcription and that transcription initiates 242 nucleotides upstream of the osmY open reading frame. Relative to the transcriptional start site, 5' deletions up to -36 did not inhibit osmY expression. 3' deletions that extended into the untranslated leader region affected the overall level of osmY::lacZ expression but did not affect inducibility. 5' and 3' deletions that extended past the transcriptional start region essentially abolished osmY expression, suggesting that there is a single promoter region. A putative promoter was identified, and its -10 region, TATATT, closely resembles the sigma 70 consensus -10 sequence, TATAAT. However, we show that osmY is not absolutely dependent on a functional sigma 70 for its expression. Since osmY expression does require rpoS (R. Hengge-Aronis, R. Lange, N. Henneberg, and D. Fischer, J. Bacteriol. 175:259-265, 1993), which encodes a stationary-phase sigma factor, sigma S (K. Tanaka, Y. Takayanagi, N. Fujita, A. Ishihama, and H. Takahashi, Proc. Natl. Acad. Sci. USA 90:3511-3515, 1993), E sigma S may be the form of RNA polymerase responsible for transcription of osmY.

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Year:  1994        PMID: 8282684      PMCID: PMC205019          DOI: 10.1128/jb.176.1.100-107.1994

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  41 in total

1.  Protein measurement with the Folin phenol reagent.

Authors:  O H LOWRY; N J ROSEBROUGH; A L FARR; R J RANDALL
Journal:  J Biol Chem       Date:  1951-11       Impact factor: 5.157

2.  A procedure for isolation of spontaneous mutants with temperature sensitive of RNA and/or protein.

Authors:  L A Isaksson; S E Sköld; J Skjöldebrand; R Takata
Journal:  Mol Gen Genet       Date:  1977-11-18

Review 3.  Survival of hunger and stress: the role of rpoS in early stationary phase gene regulation in E. coli.

Authors:  R Hengge-Aronis
Journal:  Cell       Date:  1993-01-29       Impact factor: 41.582

4.  Signal transduction between the two regulatory components involved in the regulation of the kdpABC operon in Escherichia coli: phosphorylation-dependent functioning of the positive regulator, KdpE.

Authors:  K Nakashima; A Sugiura; K Kanamaru; T Mizuno
Journal:  Mol Microbiol       Date:  1993-01       Impact factor: 3.501

5.  Osmotic regulation of rpoS-dependent genes in Escherichia coli.

Authors:  R Hengge-Aronis; R Lange; N Henneberg; D Fischer
Journal:  J Bacteriol       Date:  1993-01       Impact factor: 3.490

6.  Transposition and fusion of the lac genes to selected promoters in Escherichia coli using bacteriophage lambda and Mu.

Authors:  M J Casadaban
Journal:  J Mol Biol       Date:  1976-07-05       Impact factor: 5.469

Review 7.  Bacterial regulation: global regulatory networks.

Authors:  S Gottesman
Journal:  Annu Rev Genet       Date:  1984       Impact factor: 16.830

8.  Lambda placMu: a transposable derivative of bacteriophage lambda for creating lacZ protein fusions in a single step.

Authors:  E Bremer; T J Silhavy; J M Weisemann; G M Weinstock
Journal:  J Bacteriol       Date:  1984-06       Impact factor: 3.490

9.  Heterogeneity of the principal sigma factor in Escherichia coli: the rpoS gene product, sigma 38, is a second principal sigma factor of RNA polymerase in stationary-phase Escherichia coli.

Authors:  K Tanaka; Y Takayanagi; N Fujita; A Ishihama; H Takahashi
Journal:  Proc Natl Acad Sci U S A       Date:  1993-04-15       Impact factor: 11.205

10.  Evidence for two functional gal promoters in intact Escherichia coli cells.

Authors:  H Aiba; S Adhya; B de Crombrugghe
Journal:  J Biol Chem       Date:  1981-11-25       Impact factor: 5.157

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  43 in total

1.  sigma(70) is the principal sigma factor responsible for transcription of acs, which encodes acetyl coenzyme A synthetase in Escherichia coli.

Authors:  S Kumari; E J Simel; A J Wolfe
Journal:  J Bacteriol       Date:  2000-01       Impact factor: 3.490

Review 2.  Osmosensing by bacteria: signals and membrane-based sensors.

Authors:  J M Wood
Journal:  Microbiol Mol Biol Rev       Date:  1999-03       Impact factor: 11.056

3.  RpoS-regulated genes of Escherichia coli identified by random lacZ fusion mutagenesis.

Authors:  Somalinga R V Vijayakumar; Mark G Kirchhof; Cheryl L Patten; Herb E Schellhorn
Journal:  J Bacteriol       Date:  2004-12       Impact factor: 3.490

4.  Microarray analysis of RpoS-mediated gene expression in Escherichia coli K-12.

Authors:  C L Patten; M G Kirchhof; M R Schertzberg; R A Morton; H E Schellhorn
Journal:  Mol Genet Genomics       Date:  2004-11-19       Impact factor: 3.291

5.  SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences.

Authors:  Stephan Lacour; Paolo Landini
Journal:  J Bacteriol       Date:  2004-11       Impact factor: 3.490

6.  Sequences in the -35 region of Escherichia coli rpoS-dependent genes promote transcription by E sigma S.

Authors:  A Wise; R Brems; V Ramakrishnan; M Villarejo
Journal:  J Bacteriol       Date:  1996-05       Impact factor: 3.490

7.  Identification of conserved, RpoS-dependent stationary-phase genes of Escherichia coli.

Authors:  H E Schellhorn; J P Audia; L I Wei; L Chang
Journal:  J Bacteriol       Date:  1998-12       Impact factor: 3.490

Review 8.  Linkage map of Escherichia coli K-12, edition 10: the traditional map.

Authors:  M K Berlyn
Journal:  Microbiol Mol Biol Rev       Date:  1998-09       Impact factor: 11.056

9.  Effects of H-NS and potassium glutamate on sigmaS- and sigma70-directed transcription in vitro from osmotically regulated P1 and P2 promoters of proU in Escherichia coli.

Authors:  K Rajkumari; S Kusano; A Ishihama; T Mizuno; J Gowrishankar
Journal:  J Bacteriol       Date:  1996-07       Impact factor: 3.490

10.  Analysis of promoter elements involved in the transcriptional initiation of RpoS-dependent Borrelia burgdorferi genes.

Authors:  Christian H Eggers; Melissa J Caimano; Justin D Radolf
Journal:  J Bacteriol       Date:  2004-11       Impact factor: 3.490

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