Literature DB >> 8263922

Role of an active site residue analyzed by combination of mutagenesis and coenzyme analog.

T Yano1, Y Hinoue, V J Chen, D E Metzler, I Miyahara, K Hirotsu, H Kagamiyama.   

Abstract

Asp222 of aspartate aminotransferase is an active-site residue which interacts with the pyridine nitrogen of the coenzyme, pyridoxal 5'-phosphate (PLP). The roles of Asp222 in the catalytic mechanism of Escherichia coli aspartate aminotransferase have previously been explored by site-directed mutagenesis. These studies confirmed that a negatively charged residue at position 222 is essential for catalysis, but the reason for this remained speculative. In the present studies, the roles of Asp222 were clarified experimentally by analyzing the mutant D222A enzyme (Asp222 replaced by Ala) reconstituted with the coenzyme analog N(1)-methylated PLP (N-MePLP). Spectroscopic and kinetic analyses showed that Asp222 stabilizes the protonated N(1) of PLP, raising the pKa value of N(1) by more than five units, in the active site of AspAT. The positive charge at N(1) accelerates abstraction of the alpha-proton from the amino acid substrate, stabilizing the transition state by 1.4 to 4.5 kcal.mol-1 in the reaction with aspartate. X-ray crystallographic (2.0 A resolution) and CD spectroscopic studies suggest that the coenzyme analog is not held in a proper orientation within the active site of D222A (N-MePLP). This may account for the finding that the catalytic activity was recovered only partially by the reconstitution of D222A with N-MePLP. These results fully support the following postulated role of Asp222: the negative charge of Asp222 stabilizes the positive charge at N(1) of PLP and thereby enhances the function of PLP as an electron sink.

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Year:  1993        PMID: 8263922     DOI: 10.1006/jmbi.1993.1672

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  6 in total

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Journal:  Biochim Biophys Acta       Date:  2011-06-06

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4.  Chemoenzymatic synthesis of 1-deaza-pyridoxal 5'-phosphate.

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Journal:  Bioorg Med Chem Lett       Date:  2010-01-07       Impact factor: 2.823

5.  Structural motifs for pyridoxal-5'-phosphate binding in decarboxylases: an analysis based on the crystal structure of the Lactobacillus 30a ornithine decarboxylase.

Authors:  C Momany; R Ghosh; M L Hackert
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6.  Radiation damage at the active site of human alanine:glyoxylate aminotransferase reveals that the cofactor position is finely tuned during catalysis.

Authors:  Giorgio Giardina; Alessandro Paiardini; Riccardo Montioli; Barbara Cellini; Carla Borri Voltattorni; Francesca Cutruzzolà
Journal:  Sci Rep       Date:  2017-09-15       Impact factor: 4.379

  6 in total

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