Literature DB >> 8241401

An approximate model and empirical energy function for solute interactions with a water-phosphatidylcholine interface.

C R Sanders1, J P Schwonek.   

Abstract

An empirical model of a liquid crystalline (L alpha phase) phosphatidylcholine (PC) bilayer interface is presented along with a function which calculates the position-dependent energy of associated solutes. The model approximates the interface as a gradual two-step transition, the first step being from an aqueous phase to a phase of reduced polarity, but which maintains a high enough concentration of water and/or polar head group moieties to satisfy the hydrogen bond-forming potential of the solute. The second transition is from the hydrogen bonding/low polarity region to an effectively anhydrous hydrocarbon phase. The "interfacial energies" of solutes within this variable medium are calculated based upon atomic positions and atomic parameters describing general polarity and hydrogen bond donor/acceptor propensities. This function was tested for its ability to reproduce experimental water-solvent partitioning energies and water-bilayer partitioning data. In both cases, the experimental data was reproduced fairly well. Energy minimizations carried out on beta-hexyl glucopyranoside led to identification of a global minimum for the interface-associated glycolipid which exhibited glycosidic torsion angles in agreement with prior results (Hare, B.J., K.P. Howard, and J.H. Prestegard. 1993. Biophys. J. 64:392-398). Molecular dynamics simulations carried out upon this same molecule within the simulated interface led to results which were consistent with a number of experimentally based conclusions from previous work, but failed to quantitatively reproduce an available NMR quadrupolar/dipolar coupling data set (Sanders, C.R., and J.H. Prestegard. 1991. J. Am. Chem. Soc. 113:1987-1996). The proposed model and functions are readily incorporated into computational energy modeling algorithms and may prove useful in future studies of membrane-associated molecules.

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Year:  1993        PMID: 8241401      PMCID: PMC1225840          DOI: 10.1016/S0006-3495(93)81158-5

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  28 in total

1.  Computer modelling of glycolipids at membrane surfaces.

Authors:  P Ram; E Kim; D S Thomson; K P Howard; J H Prestegard
Journal:  Biophys J       Date:  1992-12       Impact factor: 4.033

2.  Canonical dynamics: Equilibrium phase-space distributions.

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Journal:  Phys Rev A Gen Phys       Date:  1985-03

3.  Partition behavior of a nonionic detergent, octyl glucoside, between membrane and water phases, and its effect on membrane permeability.

Authors:  M Ueno
Journal:  Biochemistry       Date:  1989-06-27       Impact factor: 3.162

4.  Shape of the hydrophobic barrier of phospholipid bilayers (evidence for water penetration in biological membranes).

Authors:  O H Griffith; P J Dehlinger; S P Van
Journal:  J Membr Biol       Date:  1974       Impact factor: 1.843

5.  Chain ordering in liquid crystals. II. Structure of bilayer membranes.

Authors:  S Marcelja
Journal:  Biochim Biophys Acta       Date:  1974-10-29

6.  Thermodynamic constants for nonelectrolyte partition between dimyristoyl lecithin and water.

Authors:  Y Katz; J M Diamond
Journal:  J Membr Biol       Date:  1974       Impact factor: 1.843

7.  Torsion angle analysis of glycolipid order at membrane surfaces.

Authors:  B J Hare; K P Howard; J H Prestegard
Journal:  Biophys J       Date:  1993-02       Impact factor: 4.033

8.  Conformational analysis of the calcium--A23187 complex at a lipid--water interface.

Authors:  R Brasseur; M Deleers; W J Malaisse; J M Ruysschaert
Journal:  Proc Natl Acad Sci U S A       Date:  1982-05       Impact factor: 11.205

9.  Characterization of magnetically orientable bilayers in mixtures of dihexanoylphosphatidylcholine and dimyristoylphosphatidylcholine by solid-state NMR.

Authors:  C R Sanders; J P Schwonek
Journal:  Biochemistry       Date:  1992-09-22       Impact factor: 3.162

10.  On the use of deuterium nuclear magnetic resonance as a probe of chain packing in lipid bilayers.

Authors:  N Boden; S A Jones; F Sixl
Journal:  Biochemistry       Date:  1991-02-26       Impact factor: 3.162

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  10 in total

Review 1.  Modeling kinetics of subcellular disposition of chemicals.

Authors:  Stefan Balaz
Journal:  Chem Rev       Date:  2009-05       Impact factor: 60.622

Review 2.  Life During Wartime: A Personal Recollection of the Circa 1990 Prestegard Lab and Its Contributions to Membrane Biophysics.

Authors:  Charles R Sanders
Journal:  J Membr Biol       Date:  2019-08-30       Impact factor: 1.843

3.  Simulation of NMR data from oriented membrane proteins: practical information for experimental design.

Authors:  C R Sanders; J P Schwonek
Journal:  Biophys J       Date:  1993-10       Impact factor: 4.033

4.  7-nitrobenz-2-oxa-1,3-diazole-4-yl-labeled phospholipids in lipid membranes: differences in fluorescence behavior.

Authors:  S Mazères; V Schram; J F Tocanne; A Lopez
Journal:  Biophys J       Date:  1996-07       Impact factor: 4.033

5.  Membrane protein native state discrimination by implicit membrane models.

Authors:  Olga Yuzlenko; Themis Lazaridis
Journal:  J Comput Chem       Date:  2012-12-07       Impact factor: 3.376

6.  Structural determinants of drug partitioning in surrogates of phosphatidylcholine bilayer strata.

Authors:  Viera Lukacova; Senthil Natesan; Ming Peng; Roman Tandlich; Zhanbin Wang; Sandra Lynch; Rajesh Subramaniam; Stefan Balaz
Journal:  Mol Pharm       Date:  2013-09-11       Impact factor: 4.939

7.  A predictive algorithm for skin permeability: the effects of molecular size and hydrogen bond activity.

Authors:  R O Potts; R H Guy
Journal:  Pharm Res       Date:  1995-11       Impact factor: 4.200

8.  An NMR study of pyridine associated with DMPC liposomes and magnetically ordered DMPC-surfactant mixed micelles.

Authors:  J M Henderson; R M Iannucci; M Petersheim
Journal:  Biophys J       Date:  1994-07       Impact factor: 4.033

9.  Coexistence of probe conformations in lipid phases-a polarized fluorescence microspectroscopy study.

Authors:  Iztok Urbančič; Ajasja Ljubetič; Zoran Arsov; Janez Strancar
Journal:  Biophys J       Date:  2013-08-20       Impact factor: 4.033

10.  Structure-based prediction of drug distribution across the headgroup and core strata of a phospholipid bilayer using surrogate phases.

Authors:  Senthil Natesan; Viera Lukacova; Ming Peng; Rajesh Subramaniam; Sandra Lynch; Zhanbin Wang; Roman Tandlich; Stefan Balaz
Journal:  Mol Pharm       Date:  2014-09-18       Impact factor: 4.939

  10 in total

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