Literature DB >> 8241389

Langevin dynamics studies of unsaturated phospholipids in a membrane environment.

L L Pearce1, S C Harvey.   

Abstract

Computer simulations of three unsaturated phospholipids in a membrane environment have been carried out using Langevin dynamics and a mean-field based on the Marcelja model. The applicability of the mean-field to model unsaturated lipids was judged by comparison to available experimental NMR data. The results show that the mean-field methodology and the parameters developed for saturated lipids are applicable in simulations of unsaturated molecules, indicating that these simulations have good predictive capabilities. Single molecule simulations, each 100 ns in length, of 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC), 1-palmitoyl-2-elaidoyl-sn-glycero-3-phosphocholine (PEPC), and 1-palmitoyl-2-isolinoleoyl-sn-glycero-3-phosphocholine (PiLPC) reveal similarities between PEPC and DPPC. The presence of the trans double bond in PEPC has a minimum impact on the structural and dynamic properties of the molecule, which is probably the reason that isolated trans double bonds are rare in biological lipids. POPC exhibits different behavior, especially in the calculated average interchain distances, because of the cis double bond. The position of the two double bonds in PiLPC imparts special properties to the molecule.

Entities:  

Mesh:

Substances:

Year:  1993        PMID: 8241389      PMCID: PMC1225825          DOI: 10.1016/S0006-3495(93)81143-3

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  7 in total

1.  Langevin dynamics of peptides: the frictional dependence of isomerization rates of N-acetylalanyl-N'-methylamide.

Authors:  R J Loncharich; B R Brooks; R W Pastor
Journal:  Biopolymers       Date:  1992-05       Impact factor: 2.505

2.  Mean field stochastic boundary molecular dynamics simulation of a phospholipid in a membrane.

Authors:  H De Loof; S C Harvey; J P Segrest; R W Pastor
Journal:  Biochemistry       Date:  1991-02-26       Impact factor: 3.162

3.  Molecular model for phase transition in biological membranes.

Authors:  S Marcelja
Journal:  Nature       Date:  1973-02-16       Impact factor: 49.962

4.  Molecular order in cis and trans unsaturated phospholipid bilayers.

Authors:  J Seelig; N Waespe-Sarcevic
Journal:  Biochemistry       Date:  1978-08-08       Impact factor: 3.162

5.  Deuterium order parameters in relation to thermodynamic properties of a phospholiped bilayer. A statistical mechanical interpretation.

Authors:  H Schindler; J Seelig
Journal:  Biochemistry       Date:  1975-06-03       Impact factor: 3.162

6.  Average structural and motional properties of a diunsaturated acyl chain in a lipid bilayer: effects of two cis-unsaturated double bonds.

Authors:  J E Baenziger; H C Jarrell; R J Hill; I C Smith
Journal:  Biochemistry       Date:  1991-01-29       Impact factor: 3.162

Review 7.  Computer-based modeling of the conformation and packing properties of docosahexaenoic acid.

Authors:  K R Applegate; J A Glomset
Journal:  J Lipid Res       Date:  1986-06       Impact factor: 5.922

  7 in total
  9 in total

1.  Effects of unsaturation and curvature on the transverse distribution of intramolecular dynamics of dipyrenyl lipids.

Authors:  K H Cheng; P Somerharju
Journal:  Biophys J       Date:  1996-05       Impact factor: 4.033

2.  Molecular dynamics simulation of unsaturated lipid bilayers at low hydration: parameterization and comparison with diffraction studies.

Authors:  S E Feller; D Yin; R W Pastor; A D MacKerell
Journal:  Biophys J       Date:  1997-11       Impact factor: 4.033

3.  Effects of chain unsaturation on the equation of state for lipid monolayers at the air-water interface.

Authors:  S S Feng; R C MacDonald
Journal:  Biophys J       Date:  1995-08       Impact factor: 4.033

4.  Effects of phospholipid unsaturation on the membrane/water interface: a molecular simulation study.

Authors:  K Murzyn; T Róg; G Jezierski; Y Takaoka; M Pasenkiewicz-Gierula
Journal:  Biophys J       Date:  2001-07       Impact factor: 4.033

5.  Molecular dynamics on a model for nascent high-density lipoprotein: role of salt bridges.

Authors:  C Sheldahl; S C Harvey
Journal:  Biophys J       Date:  1999-03       Impact factor: 4.033

6.  Molecular dynamics investigation of bond ordering of unsaturated lipids in monolayers.

Authors:  A L Rabinovich; P O Ripatti; N K Balabaev
Journal:  J Biol Phys       Date:  1999-06       Impact factor: 1.365

7.  Langevin dynamics of the choline head group in a membrane environment.

Authors:  P H Konstant; L L Pearce; S C Harvey
Journal:  Biophys J       Date:  1994-08       Impact factor: 4.033

8.  Intramolecular excimer kinetics of fluorescent dipyrenyl lipids: 1. DMPC/cholesterol membranes.

Authors:  K H Cheng; L Ruymgaart; L I Liu; P Somerharju; I P Sugar
Journal:  Biophys J       Date:  1994-08       Impact factor: 4.033

Review 9.  Lipid composition of cell membranes and its relevance in type 2 diabetes mellitus.

Authors:  Rob N M Weijers
Journal:  Curr Diabetes Rev       Date:  2012-09
  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.