Literature DB >> 11423404

Effects of phospholipid unsaturation on the membrane/water interface: a molecular simulation study.

K Murzyn1, T Róg, G Jezierski, Y Takaoka, M Pasenkiewicz-Gierula.   

Abstract

Molecular dynamics (MD) simulations of fully hydrated bilayers in the liquid-crystalline state made of 1-palmitoyl-2-oleoyl-phosphatidylcholine (POPC) or 1-palmitoyl-2-elaidoyl-phosphatidylcholine (PEPC) were carried out to investigate the effect of the incorporation of a double bond in the phosphatidylcholine (PC) beta-chain (cis or trans) on the membrane/water interface. The bilayers reached thermal equilibrium after 3 and 1 ns of MD simulations, respectively, and productive runs were carried out for 3 ns for each bilayer. As reference systems, the 1,2-dimyristoyl-phosphatidylcholine (DMPC) bilayer (M. Pasenkiewicz-Gierula, Y. Takaoka, H. Miyagawa, K. Kitamura, and A. Kusumi, 1999, Biophys. J. 76:1228-1240) and DMPC-cholesterol (Chol) bilayer containing 22 mol % Chol (M. Pasenkiewicz-Gierula, T. Róg, K. Kitamura, A. and Kusumi, 2000, Biophys. J. 78:1376-1389) were used. The study shows that at the interface of POPC, PEPC, and DMPC-Chol bilayers, average numbers of PC-water and PC-PC interactions are similar and, respectively, greater and smaller than in the DMPC bilayer. The average area/PC in mono-unsaturated bilayers is approximately 4 A(2) larger than in the DMPC bilayer; nevertheless, a strong correlation was found between a single molecular area (SMA) of a PC and the number of interactions this PC makes; i.e., PCs (either saturated or unsaturated) with the same SMA form similar numbers of intermolecular links. The numbers and corresponding SMAs are distributed about averages pertinent to each bilayer. No significant difference between cis and trans bonds was found.

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Year:  2001        PMID: 11423404      PMCID: PMC1301501          DOI: 10.1016/S0006-3495(01)75689-5

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  44 in total

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Authors:  J Seelig; N Waespe-Sarcevic
Journal:  Biochemistry       Date:  1978-08-08       Impact factor: 3.162

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Journal:  Biochemistry       Date:  1977-10-04       Impact factor: 3.162

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Journal:  Nature       Date:  1979-10-11       Impact factor: 49.962

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Authors:  A Seelig; J Seelig
Journal:  Biochemistry       Date:  1977-01-11       Impact factor: 3.162

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Journal:  Biochim Biophys Acta       Date:  1983-02-09

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Journal:  Biophys J       Date:  1978-08       Impact factor: 4.033

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Journal:  Biophys J       Date:  1993-09       Impact factor: 4.033

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  30 in total

1.  Saturation with cholesterol increases vertical order and smoothes the surface of the phosphatidylcholine bilayer: a molecular simulation study.

Authors:  Elżbieta Plesnar; Witold K Subczynski; Marta Pasenkiewicz-Gierula
Journal:  Biochim Biophys Acta       Date:  2011-10-29

Review 2.  Modeling kinetics of subcellular disposition of chemicals.

Authors:  Stefan Balaz
Journal:  Chem Rev       Date:  2009-05       Impact factor: 60.622

3.  Mesoscale computational studies of membrane bilayer remodeling by curvature-inducing proteins.

Authors:  N Ramakrishnan; P B Sunil Kumar; Ravi Radhakrishnan
Journal:  Phys Rep       Date:  2014-10-01       Impact factor: 25.600

4.  Influence of chain length and unsaturation on sphingomyelin bilayers.

Authors:  Perttu S Niemelä; Marja T Hyvönen; Ilpo Vattulainen
Journal:  Biophys J       Date:  2005-11-11       Impact factor: 4.033

5.  Cholesterol effects on the phosphatidylcholine bilayer nonpolar region: a molecular simulation study.

Authors:  T Róg; M Pasenkiewicz-Gierula
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

6.  Molecular dynamics simulations of unsaturated lipid bilayers: effects of varying the numbers of double bonds.

Authors:  Marja T Hyvönen; Petri T Kovanen
Journal:  Eur Biophys J       Date:  2005-02-02       Impact factor: 1.733

7.  Water replacement hypothesis in atomic detail--factors determining the structure of dehydrated bilayer stacks.

Authors:  Elena A Golovina; Andrey V Golovin; Folkert A Hoekstra; Roland Faller
Journal:  Biophys J       Date:  2009-07-22       Impact factor: 4.033

8.  Construction of a toroidal model for the magainin pore.

Authors:  Krzysztof Murzyn; Marta Pasenkiewicz-Gierula
Journal:  J Mol Model       Date:  2003-05-27       Impact factor: 1.810

9.  Effects of a carane derivative local anesthetic on a phospholipid bilayer studied by molecular dynamics simulation.

Authors:  M Pasenkiewicz-Gierula; T Róg; J Grochowski; P Serda; R Czarnecki; T Librowski; S Lochyński
Journal:  Biophys J       Date:  2003-08       Impact factor: 4.033

10.  Interplay of unsaturated phospholipids and cholesterol in membranes: effect of the double-bond position.

Authors:  Hector Martinez-Seara; Tomasz Róg; Marta Pasenkiewicz-Gierula; Ilpo Vattulainen; Mikko Karttunen; Ramon Reigada
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

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