Literature DB >> 8234292

Split decomposition: a technique to analyze viral evolution.

J Dopazo1, A Dress, A von Haeseler.   

Abstract

A clustering technique allowing a restricted amount of overlapping and based on an abstract theory of coherent decompositions of finite metrics is used to analyze the evolution of foot-and-mouth disease viruses. The emerging picture is compatible with the existence of viral populations with a quasispecies structure and illustrates various forms of evolution of this virus family. In addition, it allows the correlation of these forms with geographic occurrence.

Entities:  

Mesh：

Year:  1993        PMID： 8234292      PMCID： PMC47766          DOI： 10.1073/pnas.90.21.10320

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  24 in total

Review 1.  Bacterial evolution.

Authors:  C R Woese
Journal:  Microbiol Rev       Date:  1987-06

2.  Subtyping of European foot-and-mouth disease virus strains by nucleotide sequence determination.

Authors:  E Beck; K Strohmaier
Journal:  J Virol       Date:  1987-05       Impact factor: 5.103

3.  Evolution of human influenza A viruses over 50 years: rapid, uniform rate of change in NS gene.

Authors:  D A Buonagurio; S Nakada; J D Parvin; M Krystal; P Palese; W M Fitch
Journal:  Science       Date:  1986-05-23       Impact factor: 47.728

Review 4.  Construction of phylogenetic trees.

Authors:  W M Fitch; E Margoliash
Journal:  Science       Date:  1967-01-20       Impact factor: 47.728

5.  Additive evolutionary trees.

Authors:  M S Waterman; T F Smith; M Singh; W A Beyer
Journal:  J Theor Biol       Date:  1977-01-21       Impact factor: 2.691

Review 6.  The quasispecies (extremely heterogeneous) nature of viral RNA genome populations: biological relevance--a review.

Authors:  E Domingo; E Martínez-Salas; F Sobrino; J C de la Torre; A Portela; J Ortín; C López-Galindez; P Pérez-Breña; N Villanueva; R Nájera
Journal:  Gene       Date:  1985       Impact factor: 3.688

7.  Fixation of mutations in the viral genome during an outbreak of foot-and-mouth disease: heterogeneity and rate variations.

Authors:  F Sobrino; E L Palma; E Beck; M Dávila; J C de la Torre; P Negro; N Villanueva; J Ortín; E Domingo
Journal:  Gene       Date:  1986       Impact factor: 3.688

8.  Noncumulative sequence changes in the hemagglutinin genes of influenza C virus isolates.

Authors:  D A Buonagurio; S Nakada; U Desselberger; M Krystal; P Palese
Journal:  Virology       Date:  1985-10-30       Impact factor: 3.616

9.  Evolution of the capsid protein genes of foot-and-mouth disease virus: antigenic variation without accumulation of amino acid substitutions over six decades.

Authors:  M A Martínez; J Dopazo; J Hernández; M G Mateu; F Sobrino; E Domingo; N J Knowles
Journal:  J Virol       Date:  1992-06       Impact factor: 5.103

10.  The molecular basis of the antigenic variation of foot-and-mouth disease virus.

Authors:  E Beck; G Feil; K Strohmaier
Journal:  EMBO J       Date:  1983       Impact factor: 11.598
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  11 in total

1.  Allelic diversity and recombination in Campylobacter jejuni.

Authors:  S Suerbaum; M Lohrengel; A Sonnevend; F Ruberg; M Kist
Journal:  J Bacteriol       Date:  2001-04       Impact factor: 3.490

2.  Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment.

Authors:  K Strimmer; A von Haeseler
Journal:  Proc Natl Acad Sci U S A       Date:  1997-06-24       Impact factor: 11.205

3.  Evolutionary rate and genetic drift of hepatitis C virus are not correlated with the host immune response: studies of infected donor-recipient clusters.

Authors:  J P Allain; Y Dong; A M Vandamme; V Moulton; M Salemi
Journal:  J Virol       Date:  2000-03       Impact factor: 5.103

4.  Evolutionary analysis of the picornavirus family.

Authors:  M J Rodrigo; J Dopazo
Journal:  J Mol Evol       Date:  1995-04       Impact factor: 2.395

5.  A method for determining the position and size of optimal sequence regions for phylogenetic analysis.

Authors:  M J Martin; F González-Candelas; F Sobrino; J Dopazo
Journal:  J Mol Evol       Date:  1995-12       Impact factor: 2.395

6.  Genetic drift can dominate short-term human immunodeficiency virus type 1 nef quasispecies evolution in vivo.

Authors:  U Plikat; K Nieselt-Struwe; A Meyerhans
Journal:  J Virol       Date:  1997-06       Impact factor: 5.103

7.  Comparative genomics of foot-and-mouth disease virus.

Authors:  C Carrillo; E R Tulman; G Delhon; Z Lu; A Carreno; A Vagnozzi; G F Kutish; D L Rock
Journal:  J Virol       Date:  2005-05       Impact factor: 5.103

8.  Of woods and webs: possible alternatives to the tree of life for studying genomic fluidity in E. coli.

Authors:  Julie Beauregard-Racine; Cédric Bicep; Klaus Schliep; Philippe Lopez; François-Joseph Lapointe; Eric Bapteste
Journal:  Biol Direct       Date:  2011-07-20       Impact factor: 4.540

9.  Analyses of genotypic diversity among North, South, and Central American isolates of sugarcane yellow leaf virus: evidence for Colombian origins and for intraspecific spatial phylogenetic variation.

Authors:  Francis Moonan; T Erik Mirkov
Journal:  J Virol       Date:  2002-02       Impact factor: 5.103

10.  Evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen.

Authors:  Sara F Sarkar; David S Guttman
Journal:  Appl Environ Microbiol       Date:  2004-04       Impact factor: 4.792
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