Literature DB >> 8218260

Acid-induced unfolding and refolding transitions of cytochrome c: a three-state mechanism in H2O and D2O.

Y Goto1, Y Hagihara, D Hamada, M Hoshino, I Nishii.   

Abstract

Whereas the salt-dependent conformational transition of acid-denatured horse ferricytochrome c at pH 2 is approximated by a two-state mechanism from the acid-unfolded state to the molten globule state [Kataoka, M., Hagihara, Y., Mihara, K., & Goto, Y. (1993) J. Mol. Biol. 229, 591-596], the corresponding transition in D2O has been proposed to involve a noncompact, alpha-helical intermediate state (the pre-molten globule state) [Jeng, M.-F., & Englander, S. W. (1991) J. Mol. Biol. 221, 1045-1061]. To examine the proposed difference in the conformational transitions, we carried out the HCl and DCl titrations of cytochrome c in H2O and D2O, respectively, measured by far-UV circular dichroism, tryptophan fluorescence, and Soret absorption. In both D2O and H2O, unfolding from the native state to the acid-unfolded state and subsequent refolding to the molten globule state were observed. In either solvent, the conformational transitions were well approximated by a minimal three-state mechanism consisting of the native, molten globule, and acid-unfolded states. Thus, our results did not substantiate the presence of a pre-molten globule state in D2O. Acetylation of amino groups of cytochrome c is known to stabilize the molten globule state at pH 2. On the basis of the three-state mechanism, we constructed a conformational phase diagram for the effect of pH and the degree of acetylation. This phase diagram was similar to that of the pH- and salt-dependent conformational transition of cytochrome c, suggesting that the effects of acetylation on the conformational states are similar to those of salt.

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Year:  1993        PMID: 8218260     DOI: 10.1021/bi00095a017

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  30 in total

1.  Detecting equilibrium cytochrome c folding intermediates by electrospray ionisation mass spectrometry: two partially folded forms populate the molten-globule state.

Authors:  Rita Grandori
Journal:  Protein Sci       Date:  2002-03       Impact factor: 6.725

2.  Vapor treatment of electrospray droplets: evidence for the folding of initially denatured proteins on the sub-millisecond time-scale.

Authors:  Anastasia Kharlamova; J Corinne DeMuth; Scott A McLuckey
Journal:  J Am Soc Mass Spectrom       Date:  2011-10-21       Impact factor: 3.109

3.  The role of nebulizer gas flow in electrosonic spray ionization (ESSI).

Authors:  Rui Wang; Pitt Allmendinger; Liang Zhu; Arto Juhani Gröhn; Karsten Wegner; Vladimir Frankevich; Renato Zenobi
Journal:  J Am Soc Mass Spectrom       Date:  2011-04-22       Impact factor: 3.109

Review 4.  Biomolecule analysis by ion mobility spectrometry.

Authors:  Brian C Bohrer; Samuel I Merenbloom; Stormy L Koeniger; Amy E Hilderbrand; David E Clemmer
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2008       Impact factor: 10.745

5.  Volume changes of the molten globule transitions of horse heart ferricytochrome c: a thermodynamic cycle.

Authors:  K Foygel; S Spector; S Chatterjee; P C Kahn
Journal:  Protein Sci       Date:  1995-07       Impact factor: 6.725

6.  Change in structure and ligand binding properties of hyperstable cytochrome c555 from Aquifex aeolicus by domain swapping.

Authors:  Masaru Yamanaka; Satoshi Nagao; Hirofumi Komori; Yoshiki Higuchi; Shun Hirota
Journal:  Protein Sci       Date:  2015-01-14       Impact factor: 6.725

7.  Protonation dynamics of the alpha-toxin ion channel from spectral analysis of pH-dependent current fluctuations.

Authors:  J J Kasianowicz; S M Bezrukov
Journal:  Biophys J       Date:  1995-07       Impact factor: 4.033

8.  Secondary and tertiary structure of the A-state of cytochrome c from resonance Raman spectroscopy.

Authors:  T Jordan; J C Eads; T G Spiro
Journal:  Protein Sci       Date:  1995-04       Impact factor: 6.725

Review 9.  The role of key residues in structure, function, and stability of cytochrome-c.

Authors:  Sobia Zaidi; Md Imtaiyaz Hassan; Asimul Islam; Faizan Ahmad
Journal:  Cell Mol Life Sci       Date:  2013-04-25       Impact factor: 9.261

10.  Monitoring copopulated conformational states during protein folding events using electrospray ionization-ion mobility spectrometry-mass spectrometry.

Authors:  David P Smith; Kevin Giles; Robert H Bateman; Sheena E Radford; Alison E Ashcroft
Journal:  J Am Soc Mass Spectrom       Date:  2007-10-02       Impact factor: 3.109

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