Literature DB >> 8160308

The ribosome at improved resolution: new techniques for merging and orientation refinement in 3D cryo-electron microscopy of biological particles.

P A Penczek1, R A Grassucci, J Frank.   

Abstract

Cryo-electron microscopy of single biological particles opens up new possibilities for structure analysis: the particle can be reconstructed in its native shape and internal features are preserved. To take advantage of these possibilities we have developed new methods of data collection and image processing and we have applied them to the 70S Escherichia coli ribosome. A method of orientation search is proposed, which makes it possible to relate random-conical data sets to one another even if they are collected from low-tilt micrographs. A technique for 3D alignment of projections is described and applied to the single-micrograph 3D reconstruction.

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Year:  1994        PMID: 8160308     DOI: 10.1016/0304-3991(94)90038-8

Source DB:  PubMed          Journal:  Ultramicroscopy        ISSN: 0304-3991            Impact factor:   2.689


  127 in total

1.  Location of translational initiation factor IF3 on the small ribosomal subunit.

Authors:  J P McCutcheon; R K Agrawal; S M Philips; R A Grassucci; S E Gerchman; W M Clemons; V Ramakrishnan; J Frank
Journal:  Proc Natl Acad Sci U S A       Date:  1999-04-13       Impact factor: 11.205

2.  Three-dimensional structure of the signal peptide peptidase.

Authors:  Hiroyuki Miyashita; Yuusuke Maruyama; Hayato Isshiki; Satoko Osawa; Toshihiko Ogura; Kazuhiro Mio; Chikara Sato; Taisuke Tomita; Takeshi Iwatsubo
Journal:  J Biol Chem       Date:  2011-06-02       Impact factor: 5.157

3.  Three-dimensional cryo-electron microscopy localization of EF2 in the Saccharomyces cerevisiae 80S ribosome at 17.5 A resolution.

Authors:  M G Gomez-Lorenzo; C M Spahn; R K Agrawal; R A Grassucci; P Penczek; K Chakraburtty; J P Ballesta; J L Lavandera; J F Garcia-Bustos; J Frank
Journal:  EMBO J       Date:  2000-06-01       Impact factor: 11.598

4.  Three-dimensional reconstruction of the recombinant type 3 ryanodine receptor and localization of its amino terminus.

Authors:  Z Liu; J Zhang; M R Sharma; P Li; S R Chen; T Wagenknecht
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-15       Impact factor: 11.205

5.  Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.

Authors:  Mikel Valle; Jayati Sengupta; Neil K Swami; Robert A Grassucci; Nils Burkhardt; Knud H Nierhaus; Rajendra K Agrawal; Joachim Frank
Journal:  EMBO J       Date:  2002-07-01       Impact factor: 11.598

6.  Structural analysis of the RSC chromatin-remodeling complex.

Authors:  Francisco J Asturias; Wen-Hsiang Chung; Roger D Kornberg; Yahli Lorch
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-04       Impact factor: 11.205

7.  Rearrangement of the 16S precursor subunits is essential for the formation of the active 20S proteasome.

Authors:  Srinivas Mullapudi; Lee Pullan; Ozlem T Bishop; Hassan Khalil; James K Stoops; Roland Beckmann; Peter M Kloetzel; Elke Krüger; Pawel A Penczek
Journal:  Biophys J       Date:  2004-09-10       Impact factor: 4.033

8.  Structural insights into initial and intermediate steps of the ribosome-recycling process.

Authors:  Takeshi Yokoyama; Tanvir R Shaikh; Nobuhiro Iwakura; Hideko Kaji; Akira Kaji; Rajendra K Agrawal
Journal:  EMBO J       Date:  2012-03-02       Impact factor: 11.598

9.  Structural aspects of RbfA action during small ribosomal subunit assembly.

Authors:  Partha P Datta; Daniel N Wilson; Masahito Kawazoe; Neil K Swami; Tatsuya Kaminishi; Manjuli R Sharma; Timothy M Booth; Chie Takemoto; Paola Fucini; Shigeyuki Yokoyama; Rajendra K Agrawal
Journal:  Mol Cell       Date:  2007-11-09       Impact factor: 17.970

10.  Cryo-EM structure of the mammalian eukaryotic release factor eRF1-eRF3-associated termination complex.

Authors:  Derek Taylor; Anett Unbehaun; Wen Li; Sanchaita Das; Jianlin Lei; Hstau Y Liao; Robert A Grassucci; Tatyana V Pestova; Joachim Frank
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-22       Impact factor: 11.205

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