Literature DB >> 8125914

Functional and structural role of a tryptophan generally observed in protein-carbohydrate interaction. TRP-62 of hen egg white lysozyme.

K Maenaka1, G Kawai, K Watanabe, F Sunada, I Kumagai.   

Abstract

In order to elucidate the role of the aromatic ring in recognition of the sugar ring, Trp-62 of hen egg white lysozyme, which is proposed on the basis of x-ray crystallography data to make contact with a sugar ring through van der Waals interaction, was replaced with aliphatic amino acids (Leu, Ile, Val, and Ala) and Gly by site-directed mutagenesis. In spite of the loss of the aromatic effect, these mutant lysozymes, except for the Trp-62-->Gly mutant, showed higher bacteriolytic activity than the wild-type lysozyme. Furthermore, the Trp-62-->Gly mutant still retained appreciable bacteriolytic activity. On the other hand, by these replacements, the enzymatic activities toward non-charged substrates were markedly reduced. Additionally, the side-chain structure of position 62 was found to be largely responsible for recognition of a saccharide ring in its active site cleft. NMR analysis of the Trp-62-->Leu and Trp-62-->Gly mutants indicated that the structural effects of Trp-62 replacements were localized in the loop region around position 62 and the part of the beta-sheet containing the hydrogen bonding network important for enzymatic activity. Thus, we conclude that Trp-62 not only interacts with oligosaccharide through van der Waals contact, but also maintains the local structural conformation to produce the lysozyme-oligosaccharide interaction.

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Year:  1994        PMID: 8125914

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  14 in total

1.  Subresidue-Resolution Footprinting of Ligand-Protein Interactions by Carbene Chemistry and Ion Mobility-Mass Spectrometry.

Authors:  Gaoyuan Lu; Xiaowei Xu; Gongyu Li; Huiyong Sun; Nian Wang; Yinxue Zhu; Ning Wan; Yatao Shi; Guangji Wang; Lingjun Li; Haiping Hao; Hui Ye
Journal:  Anal Chem       Date:  2019-12-11       Impact factor: 6.986

2.  Characterization of the unfolded state of bovine alpha-lactalbumin and comparison with unfolded states of homologous proteins.

Authors:  Julia Wirmer; Holger Berk; Raffaella Ugolini; Christina Redfield; Harald Schwalbe
Journal:  Protein Sci       Date:  2006-06       Impact factor: 6.725

3.  Prediction and Fourier-transform infrared-spectroscopy estimation of the secondary structure of a recombinant beta-glucosidase from Streptomyces sp. (ATCC 11238).

Authors:  J A Perez-Pons; E Padros; E Querol
Journal:  Biochem J       Date:  1995-06-15       Impact factor: 3.857

Review 4.  CH-π Interactions in Glycan Recognition.

Authors:  Laura L Kiessling; Roger C Diehl
Journal:  ACS Chem Biol       Date:  2021-10-06       Impact factor: 4.634

5.  Structural relationships in the lysozyme superfamily: significant evidence for glycoside hydrolase signature motifs.

Authors:  Alexandre Wohlkönig; Joëlle Huet; Yvan Looze; René Wintjens
Journal:  PLoS One       Date:  2010-11-09       Impact factor: 3.240

6.  Probing the conformation and orientation of adsorbed enzymes using side-chain modification.

Authors:  Kenan P Fears; Balakrishnan Sivaraman; Gary L Powell; Yonnie Wu; Robert A Latour
Journal:  Langmuir       Date:  2009-08-18       Impact factor: 3.882

7.  Structural and functional effect of Trp-62-->Gly and Asp-101-->Gly substitutions on substrate-binding modes of mutant hen egg-white lysozymes.

Authors:  K Maenaka; M Matsushima; G Kawai; A Kidera; K Watanabe; R Kuroki; I Kumagai
Journal:  Biochem J       Date:  1998-07-01       Impact factor: 3.857

8.  Structures of partridge egg-white lysozyme with and without tri-N-acetylchitotriose inhibitor at 1.9 A resolution.

Authors:  M A Turner; P L Howell
Journal:  Protein Sci       Date:  1995-03       Impact factor: 6.725

Review 9.  Electrochemistry of nonconjugated proteins and glycoproteins. Toward sensors for biomedicine and glycomics.

Authors:  Emil Paleček; Jan Tkáč; Martin Bartošík; Tomáš Bertók; Veronika Ostatná; Jan Paleček
Journal:  Chem Rev       Date:  2015-02-09       Impact factor: 60.622

10.  A novel C-type lysozyme from Mytilus galloprovincialis: insight into innate immunity and molecular evolution of invertebrate C-type lysozymes.

Authors:  Qing Wang; Chunyan Wang; Changkao Mu; Huifeng Wu; Linbao Zhang; Jianmin Zhao
Journal:  PLoS One       Date:  2013-06-20       Impact factor: 3.240

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