Literature DB >> 8052530

A plant scaffold attached region detected close to a T-DNA integration site is active in mammalian cells.

A Dietz1, V Kay, T Schlake, J Landsmann, J Bode.   

Abstract

Integration of foreign genes into plant genomes by the Agrobacterium T-DNA transfer system has been considered to occur at random. It has been speculated that the chromosomal structure of the integration site might affect the expression pattern of the introduced genes. To gain insight into the molecular structure of T-DNA integration sites and its possible impact on gene expression, we have examined plant DNA sequences in the vicinity of T-DNA borders. Analysis of a transgenic petunia plant containing a chloramphenicol acetyltransferase (CAT) gene regulated by the hemoglobin promoter (PAR) from Parasponia andersonii revealed a scaffold attachment region (SAR) close to one T-DNA end. In addition to having strong binding affinities for both animal and plant nuclear scaffolds this petunia SAR element is as active in mammalian cells as the authentic elements from mammalian sources.

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Year:  1994        PMID: 8052530      PMCID: PMC308243          DOI: 10.1093/nar/22.14.2744

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  52 in total

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Journal:  J Cell Biochem       Date:  1991-10       Impact factor: 4.429

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Journal:  Biochemistry       Date:  1988-06-28       Impact factor: 3.162

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5.  Yeast ARS function and nuclear matrix association coincide in a short sequence from the human HPRT locus.

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Journal:  Mol Gen Genet       Date:  1988-05

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Journal:  J Mol Biol       Date:  1987-12-20       Impact factor: 5.469

7.  Broad host range DNA cloning system for gram-negative bacteria: construction of a gene bank of Rhizobium meliloti.

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Journal:  Proc Natl Acad Sci U S A       Date:  1980-12       Impact factor: 11.205

8.  The matrix attachment regions of the chicken lysozyme gene co-map with the boundaries of the chromatin domain.

Authors:  P V Loc; W H Strätling
Journal:  EMBO J       Date:  1988-03       Impact factor: 11.598

9.  Isolation and identification of TL-DNA/plant junctions in Convolvulus arvensis transformed by Agrobacterium rhizogenes strain A4.

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Journal:  EMBO J       Date:  1985-12-01       Impact factor: 11.598

10.  SAR-dependent mobilization of histone H1 by HMG-I/Y in vitro: HMG-I/Y is enriched in H1-depleted chromatin.

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Journal:  EMBO J       Date:  1993-08       Impact factor: 11.598

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  10 in total

1.  Target sites for SINE integration in Brassica genomes display nuclear matrix binding activity.

Authors:  A P Tikhonov; L Lavie; C Tatout; J L Bennetzen; Z Avramova; J M Deragon
Journal:  Chromosome Res       Date:  2001       Impact factor: 5.239

2.  Molecular structure and regulatory potential of a T-DNA integration site in petunia.

Authors:  Antje Dietz-Pfeilstetter; Nicola Arndt; Volker Kay; Jürgen Bode
Journal:  Transgenic Res       Date:  2003-02       Impact factor: 2.788

3.  Evaluation of sequence motifs found in scaffold/matrix-attached regions (S/MARs).

Authors:  I Liebich; J Bode; I Reuter; E Wingender
Journal:  Nucleic Acids Res       Date:  2002-08-01       Impact factor: 16.971

4.  Effects of a petunia scaffold/matrix attachment region on copy number dependency and stability of transgene expression in Nicotiana tabacum.

Authors:  Antje Dietz-Pfeilstetter; Nicola Arndt; Ulrike Manske
Journal:  Transgenic Res       Date:  2016-01-05       Impact factor: 2.788

5.  Nuclear matrix attachment regions of human papillomavirus type 16 point toward conservation of these genomic elements in all genital papillomaviruses.

Authors:  S H Tan; D Bartsch; E Schwarz; H U Bernard
Journal:  J Virol       Date:  1998-05       Impact factor: 5.103

6.  The heat shock cognate 80 gene of tomato is flanked by matrix attachment regions.

Authors:  A M Chinn; L Comai
Journal:  Plant Mol Biol       Date:  1996-12       Impact factor: 4.076

7.  Analysis of the chromatin domain organisation around the plastocyanin gene reveals an MAR-specific sequence element in Arabidopsis thaliana.

Authors:  C M van Drunen; R W Oosterling; G M Keultjes; P J Weisbeek; R van Driel; S C Smeekens
Journal:  Nucleic Acids Res       Date:  1997-10-01       Impact factor: 16.971

8.  SAF-Box, a conserved protein domain that specifically recognizes scaffold attachment region DNA.

Authors:  M Kipp; F Göhring; T Ostendorp; C M van Drunen; R van Driel; M Przybylski; F O Fackelmayer
Journal:  Mol Cell Biol       Date:  2000-10       Impact factor: 4.272

9.  The influence of matrix attachment regions on transgene expression in Arabidopsis thaliana wild type and gene silencing mutants.

Authors:  Miguel F C De Bolle; Katleen M J Butaye; Inge J W M Goderis; Piet F J Wouters; Anni Jacobs; Stijn L Delauré; Ann Depicker; Bruno P A Cammue
Journal:  Plant Mol Biol       Date:  2007-03       Impact factor: 4.076

10.  Specific binding of Drosophila nuclear protein PEP (protein on ecdysone puffs) to hsp70 DNA and RNA.

Authors:  S Hamann; W H Strätling
Journal:  Nucleic Acids Res       Date:  1998-09-15       Impact factor: 16.971

  10 in total

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