Literature DB >> 8043597

Biochemical thermodynamics.

R A Alberty1.   

Abstract

Biochemists need two types of reaction equations, chemical equations in terms of species and biochemical equations in terms of reactants at specified pH and concentrations of free metal ions that are bound by reactant species. Both types of reaction equations have corresponding equilibrium constants, K for chemical reactions and K' for biochemical reactions. When the pH is specified you enter a whole new world of thermodynamics. There are new thermodynamic properties, new names (transformed thermodynamic properties), and new values, which are quite different, especially for the standard transformed Gibbs energy. This raises nomenclature problems because it is important to be able to distinguish between chemical equations and biochemical equations at a glance. It is also important to distinguish between the standard thermodynamic properties calculated from K and its temperature coefficient and the standard transformed thermodynamic properties calculated from K' and its temperature coefficient.

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Year:  1994        PMID: 8043597     DOI: 10.1016/0167-4838(94)90045-0

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  12 in total

1.  Interrelations of ATP synthesis and proton handling in ischaemically exercising human forearm muscle studied by 31P magnetic resonance spectroscopy.

Authors:  G J Kemp; M Roussel; D Bendahan; Y Le Fur; P J Cozzone
Journal:  J Physiol       Date:  2001-09-15       Impact factor: 5.182

2.  Constraints and missing reactions in the urea cycle.

Authors:  R A Alberty
Journal:  Biophys J       Date:  1997-05       Impact factor: 4.033

3.  Theory of the origin, evolution, and nature of life.

Authors:  Erik D Andrulis
Journal:  Life (Basel)       Date:  2011-12-23

4.  A database of thermodynamic quantities for the reactions of glycolysis and the tricarboxylic acid cycle.

Authors:  X Li; R K Dash; R K Pradhan; F Qi; M Thompson; K C Vinnakota; F Wu; F Yang; D A Beard
Journal:  J Phys Chem B       Date:  2010-05-06       Impact factor: 2.991

Review 5.  Simulation of cellular biochemical system kinetics.

Authors:  Daniel A Beard
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2010-12-17

6.  Inorganic Polyphosphates As Storage for and Generator of Metabolic Energy in the Extracellular Matrix.

Authors:  Werner E G Müller; Heinz C Schröder; Xiaohong Wang
Journal:  Chem Rev       Date:  2019-11-18       Impact factor: 60.622

7.  Calculation of biochemical net reactions and pathways by using matrix operations.

Authors:  R A Alberty
Journal:  Biophys J       Date:  1996-07       Impact factor: 4.033

8.  eQuilibrator 3.0: a database solution for thermodynamic constant estimation.

Authors:  Moritz E Beber; Mattia G Gollub; Dana Mozaffari; Kevin M Shebek; Avi I Flamholz; Ron Milo; Elad Noor
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

9.  Parameter balancing in kinetic models of cell metabolism.

Authors:  Timo Lubitz; Marvin Schulz; Edda Klipp; Wolfram Liebermeister
Journal:  J Phys Chem B       Date:  2010-11-01       Impact factor: 2.991

10.  Genome-scale model for Clostridium acetobutylicum: Part I. Metabolic network resolution and analysis.

Authors:  Ryan S Senger; Eleftherios T Papoutsakis
Journal:  Biotechnol Bioeng       Date:  2008-12-01       Impact factor: 4.530

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