Literature DB >> 8020612

Ancient DNA: methodological challenges.

O Handt1, M Höss, M Krings, S Pääbo.   

Abstract

The study of ancient DNA offers the possibility of following genetic change over time. However, the field is plagued by a problem which is unique in molecular biology--the difficulty of verifying results by reproduction. Some of the reasons for this are technical and derive from the low copy number and damaged state of ancient DNA molecules. Other reasons are the unique nature of many of the objects from which DNA is extracted. We describe methodological approaches with which these problems can be alleviated in order to ensure that results are scientific in the sense that they can be reproduced by others.

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Year:  1994        PMID: 8020612     DOI: 10.1007/bf01921720

Source DB:  PubMed          Journal:  Experientia        ISSN: 0014-4754


  18 in total

1.  Molecular phylogenetic inference from saber-toothed cat fossils of Rancho La Brea.

Authors:  D N Janczewski; N Yuhki; D A Gilbert; G T Jefferson; S J O'Brien
Journal:  Proc Natl Acad Sci U S A       Date:  1992-10-15       Impact factor: 11.205

2.  Miocene DNA sequences - a dream come true?

Authors:  S Pääbo; A C Wilson
Journal:  Curr Biol       Date:  1991-02       Impact factor: 10.834

3.  Independent origins of New Zealand moas and kiwis.

Authors:  A Cooper; C Mourer-Chauviré; G K Chambers; A von Haeseler; A C Wilson; S Pääbo
Journal:  Proc Natl Acad Sci U S A       Date:  1992-09-15       Impact factor: 11.205

4.  Excrement analysis by PCR.

Authors:  M Höss; M Kohn; S Pääbo; F Knauer; W Schröder
Journal:  Nature       Date:  1992-09-17       Impact factor: 49.962

5.  Ancient HLA genes from 7,500-year-old archaeological remains.

Authors:  D A Lawlor; C D Dickel; W W Hauswirth; P Parham
Journal:  Nature       Date:  1991-02-28       Impact factor: 49.962

6.  Rapid and simple method for purification of nucleic acids.

Authors:  R Boom; C J Sol; M M Salimans; C L Jansen; P M Wertheim-van Dillen; J van der Noordaa
Journal:  J Clin Microbiol       Date:  1990-03       Impact factor: 5.948

7.  Chloroplast DNA sequence from a miocene Magnolia species.

Authors:  E M Golenberg; D E Giannasi; M T Clegg; C J Smiley; M Durbin; D Henderson; G Zurawski
Journal:  Nature       Date:  1990-04-12       Impact factor: 49.962

8.  PCR jumping in clones of 30-million-year-old DNA fragments from amber preserved termites (Mastotermes electrodominicus).

Authors:  R DeSalle; M Barcia; C Wray
Journal:  Experientia       Date:  1993-10-15

9.  Spatial and temporal continuity of kangaroo rat populations shown by sequencing mitochondrial DNA from museum specimens.

Authors:  W K Thomas; S Pääbo; F X Villablanca; A C Wilson
Journal:  J Mol Evol       Date:  1990-08       Impact factor: 2.395

10.  Phylogenetic relationships of the thylacine (Mammalia: Thylacinidae) among dasyuroid marsupials: evidence from cytochrome b DNA sequences.

Authors:  C Krajewski; A C Driskell; P R Baverstock; M J Braun
Journal:  Proc Biol Sci       Date:  1992-10-22       Impact factor: 5.349

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  42 in total

1.  Diversity of Holocene life forms in fossil glacier ice.

Authors:  E Willerslev; A J Hansen; B Christensen; J P Steffensen; P Arctander
Journal:  Proc Natl Acad Sci U S A       Date:  1999-07-06       Impact factor: 11.205

2.  Protein preservation and DNA retrieval from ancient tissues.

Authors:  H N Poinar; B A Stankiewicz
Journal:  Proc Natl Acad Sci U S A       Date:  1999-07-20       Impact factor: 11.205

3.  DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA.

Authors:  M Hofreiter; V Jaenicke; D Serre; A von Haeseler; S Pääbo
Journal:  Nucleic Acids Res       Date:  2001-12-01       Impact factor: 16.971

4.  Genetic analysis of human remains found in two eighteenth century Yakut graves at At-Dabaan.

Authors:  François-Xavier Ricaut; Sergei Kolodesnikov; Christine Keyser-Tracqui; Anatoly Nikoyevich Alekseev; Eric Crubézy; Bertrand Ludes
Journal:  Int J Legal Med       Date:  2003-11-08       Impact factor: 2.686

5.  Prospective study of use of PCR amplification and sequencing of 16S ribosomal DNA from cerebrospinal fluid for diagnosis of bacterial meningitis in a clinical setting.

Authors:  Tim Schuurman; Richard F de Boer; Anna M D Kooistra-Smid; Anton A van Zwet
Journal:  J Clin Microbiol       Date:  2004-02       Impact factor: 5.948

6.  Nuclear and mitochondrial DNA analysis of a 2,000-year-old necropolis in the Egyin Gol Valley of Mongolia.

Authors:  Christine Keyser-Tracqui; Eric Crubézy; Bertrand Ludes
Journal:  Am J Hum Genet       Date:  2003-07-10       Impact factor: 11.025

7.  Beringian paleoecology inferred from permafrost-preserved fungal DNA.

Authors:  Magnus C Lydolph; Jonas Jacobsen; Peter Arctander; M Thomas P Gilbert; David A Gilichinsky; Anders J Hansen; Eske Willerslev; Lene Lange
Journal:  Appl Environ Microbiol       Date:  2005-02       Impact factor: 4.792

Review 8.  Ancient DNA.

Authors:  Eske Willerslev; Alan Cooper
Journal:  Proc Biol Sci       Date:  2005-01-07       Impact factor: 5.349

9.  Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA.

Authors:  M Stiller; R E Green; M Ronan; J F Simons; L Du; W He; M Egholm; J M Rothberg; S G Keates; S G Keats; N D Ovodov; E E Antipina; G F Baryshnikov; Y V Kuzmin; A A Vasilevski; G E Wuenschell; J Termini; M Hofreiter; V Jaenicke-Després; S Pääbo
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-25       Impact factor: 11.205

10.  Palaeogenetic evidence supports a dual model of Neolithic spreading into Europe.

Authors:  M L Sampietro; O Lao; D Caramelli; M Lari; R Pou; M Martí; J Bertranpetit; C Lalueza-Fox
Journal:  Proc Biol Sci       Date:  2007-09-07       Impact factor: 5.349

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