Literature DB >> 8011948

Getting to the inside of cells using metabolic control analysis.

H V Westerhoff1, J H Hofmeyr, B N Kholodenko.   

Abstract

Metabolic control analysis can relate control properties of an intact system to kinetic properties (elasticity coefficients) of the enzymes within that system. The method formulating the former as matrix inverse of the latter is elaborated here for the general case and founded in standard metabolic control theory. Then a method is developed that accomplishes the reverse: it is shown that a matrix containing all elasticity coefficients and information concerning the pathway structure equals the inverse of a matrix containing flux and concentration control coefficients. As a consequence, by measuring the control properties of an intact system, one is able to deduce its in situ pathway structure and enzyme kinetic properties: This solves the ever-present question of whether the kinetic properties of enzymes in their isolated state differ from those under the conditions prevailing in the cell.

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Year:  1994        PMID: 8011948     DOI: 10.1016/0301-4622(93)e0095-m

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  7 in total

1.  Product dependence and bifunctionality compromise the ultrasensitivity of signal transduction cascades.

Authors:  Fernando Ortega; Luis Acerenza; Hans V Westerhoff; Francesc Mas; Marta Cascante
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-05       Impact factor: 11.205

2.  Elasticity analysis and design for large metabolic responses produced by changes in enzyme activities.

Authors:  Fernando Ortega; Luis Acerenza
Journal:  Biochem J       Date:  2002-10-01       Impact factor: 3.857

3.  Quantifying gene networks with regulatory strengths.

Authors:  Alberto de la Fuente; Pedro Mendes
Journal:  Mol Biol Rep       Date:  2002       Impact factor: 2.316

4.  Systems biology towards life in silico: mathematics of the control of living cells.

Authors:  Hans V Westerhoff; Alexey Kolodkin; Riaan Conradie; Stephen J Wilkinson; Frank J Bruggeman; Klaas Krab; Jan H van Schuppen; Hanna Hardin; Barbara M Bakker; Martijn J Moné; Katja N Rybakova; Marco Eijken; Hans J P van Leeuwen; Jacky L Snoep
Journal:  J Math Biol       Date:  2008-02-16       Impact factor: 2.259

5.  Control theory of metabolic channelling.

Authors:  B N Kholodenko; M Cascante; H V Westerhoff
Journal:  Mol Cell Biochem       Date:  1995-02-23       Impact factor: 3.396

Review 6.  Control theory of metabolic channelling.

Authors:  B N Kholodenko; M Cascante; H V Westerhoff
Journal:  Mol Cell Biochem       Date:  1994 Apr-May       Impact factor: 3.396

Review 7.  Exploiting stoichiometric redundancies for computational efficiency and network reduction.

Authors:  Brian P Ingalls; Eric Bembenek
Journal:  In Silico Biol       Date:  2015
  7 in total

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