Literature DB >> 8003505

Characterization of recombinant horseradish peroxidase C and three site-directed mutants, F41V, F41W, and R38K, by resonance Raman spectroscopy.

G Smulevich1, M Paoli, J F Burke, S A Sanders, R N Thorneley, A T Smith.   

Abstract

Resonance Raman spectra are reported for recombinant horseradish peroxidase C (HRP-C*) and three protein variants prepared by in vitro refolding after Escherichia coli expression. The spectra of their FeII and FeIII forms and of their complexes with benzohydroxamic acid (BHA) were recorded at neutral pH. The residues mutated were on the distal [Phe41-->Trp or Val (F41W, F41V) and Arg38-->Lys (R38K)] side of the heme. The spectra give information on the spin and ligation states via the frequencies of the core size marker bands. No detectable modification in the enzyme structure or in the heme group has been observed in the wild-type recombinant HRP-C*. The FeIII forms of both the recombinant and the plant proteins show the coexistence of a 5-(5-cHS) and a 6-coordinate high-spin (6-cHS) heme, characterized by the anomalous frequencies of certain bands, namely, v3 and v10, which we attribute to a different degree of distortion of the heme planarity with respect to other heme proteins and model compounds, resulting from external forces such as steric contacts within the protein. This effect is partially relieved upon complexation with BHA or as a result of mutation. F41W and F41V are characterized by an increase in a 6-cHS form at the expense of the 5-cHS species, and the R38K by an increase in both the 6-c high-(HS) and low-spin (LS) hemes. The 6-cHS and -LS species are characterized by normal core size marker band frequencies. The FeII-His RR band is at 243 cm-1 in HRP-C*, the high frequency value being due to hydrogen-bonding interactions between the proximal His170 N delta and the carboxylate acceptor group on Asp247. Mutation at position 38 causes a downshift of 3 cm-1 in the v(Fe-Im) stretching mode, suggesting a weakening of the Fe-Im bond strength. By comparing the results obtained with HRP-C* mutants with those previously reported for the corresponding cytochrome c peroxidase (CCP) mutants, it appears that the distal heme pocket architecture is significantly different in the two peroxidases, although the hydrogen-bonding network coupling the distal and the proximal sides of the heme appears to be conserved. Mutations on the distal side dramatically affect the capability of the protein to bind BHA. F41W and R38K mutants do not bind the substrate, whereas the F41V variant shows a 2-fold increase in affinity.(ABSTRACT TRUNCATED AT 400 WORDS)

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Year:  1994        PMID: 8003505     DOI: 10.1021/bi00189a046

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  14 in total

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Authors:  Barry D Howes; Daniela Giordano; Leonardo Boechi; Roberta Russo; Simona Mucciacciaro; Chiara Ciaccio; Federica Sinibaldi; Maria Fittipaldi; Marcelo A Martí; Darío A Estrin; Guido di Prisco; Massimo Coletta; Cinzia Verde; Giulietta Smulevich
Journal:  J Biol Inorg Chem       Date:  2010-11-13       Impact factor: 3.358

2.  Coherence spectroscopy investigations of the low-frequency vibrations of heme: effects of protein-specific perturbations.

Authors:  Flaviu Gruia; Minoru Kubo; Xiong Ye; Dan Ionascu; Changyuan Lu; Robert K Poole; Syun-Ru Yeh; Paul M Champion
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3.  Interpretation of multiple Q(0,0) bands in the absorption spectrum of Mg-mesoporphyrin embedded in horseradish peroxidase.

Authors:  E Balog; K Kis-Petik; J Fidy; M Köhler; J Friedrich
Journal:  Biophys J       Date:  1997-07       Impact factor: 4.033

Review 4.  Proximity Dependent Biotinylation: Key Enzymes and Adaptation to Proteomics Approaches.

Authors:  Payman Samavarchi-Tehrani; Reuben Samson; Anne-Claude Gingras
Journal:  Mol Cell Proteomics       Date:  2020-03-03       Impact factor: 5.911

5.  The quantum mixed-spin heme state of barley peroxidase: A paradigm for class III peroxidases.

Authors:  B D Howes; C B Schiodt; K G Welinder; M P Marzocchi; J G Ma; J Zhang; J A Shelnutt; G Smulevich
Journal:  Biophys J       Date:  1999-07       Impact factor: 4.033

6.  Haem-linked interactions in horseradish peroxidase revealed by spectroscopic analysis of the Phe-221-->Met mutant.

Authors:  B D Howes; N C Veitch; A T Smith; C G White; G Smulevich
Journal:  Biochem J       Date:  2001-01-15       Impact factor: 3.857

7.  Arabidopsis ATP A2 peroxidase. Expression and high-resolution structure of a plant peroxidase with implications for lignification.

Authors:  L Ostergaard; K Teilum; O Mirza; O Mattsson; M Petersen; K G Welinder; J Mundy; M Gajhede; A Henriksen
Journal:  Plant Mol Biol       Date:  2000-09       Impact factor: 4.076

8.  The endogenous calcium ions of horseradish peroxidase C are required to maintain the functional nonplanarity of the heme.

Authors:  Monique Laberge; Qing Huang; Reinhard Schweitzer-Stenner; Judit Fidy
Journal:  Biophys J       Date:  2003-04       Impact factor: 4.033

9.  Substrate binding and protein conformational dynamics measured by 2D-IR vibrational echo spectroscopy.

Authors:  Ilya J Finkelstein; Haruto Ishikawa; Seongheun Kim; Aaron M Massari; M D Fayer
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-12       Impact factor: 11.205

10.  Structure of poly(ethylene glycol)-modified horseradish peroxidase in organic solvents: infrared amide I spectral changes upon protein dehydration are largely caused by protein structural changes and not by water removal per se.

Authors:  Wasfi Al-Azzam; Emil A Pastrana; Yancy Ferrer; Qing Huang; Reinhard Schweitzer-Stenner; Kai Griebenow
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

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