Literature DB >> 7999757

Three-dimensional structure of phosphotriesterase: an enzyme capable of detoxifying organophosphate nerve agents.

M M Benning1, J M Kuo, F M Raushel, H M Holden.   

Abstract

Organophosphates, such as parathion and paraoxon, constitute the largest class of insecticides currently used in industrialized nations. In addition, many of these compounds are known to inhibit mammalian acetylcholinesterases thereby acting as nerve agents. Consequently, organophosphate-degrading enzymes are of considerable interest in light of their ability to detoxify such compounds. Here we report the three-dimensional structure of such an enzyme, namely, phosphotriesterase, as determined by single crystal X-ray diffraction analysis to 2.1-A resolution. Crystals employed in this investigation belonged to the space group P2(1)2(1)2 with unit cell dimensions of a = 80.3 A, b = 93.4 A, and c = 44.8 A and one molecule per asymmetric unit. The structure was solved by multiple isomorphous replacement with two heavy-atom derivatives and refined to a crystallographic R factor of 18.0%. As observed in various other enzymes, the overall fold of the molecule consists of an alpha/beta barrel with eight strands of parallel beta-pleated sheet. In addition, there are two antiparallel beta-strands at the N-terminus. The molecular model of phosphotriesterase presented here provides the initial structural framework necessary toward understanding the enzyme's broad substrate specificities and its catalytic mechanism.

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Year:  1994        PMID: 7999757     DOI: 10.1021/bi00254a008

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  21 in total

1.  Barrel structures in proteins: automatic identification and classification including a sequence analysis of TIM barrels.

Authors:  N Nagano; E G Hutchinson; J M Thornton
Journal:  Protein Sci       Date:  1999-10       Impact factor: 6.725

2.  Melamine deaminase and atrazine chlorohydrolase: 98 percent identical but functionally different.

Authors:  J L Seffernick; M L de Souza; M J Sadowsky; L P Wackett
Journal:  J Bacteriol       Date:  2001-04       Impact factor: 3.490

3.  Probing mechanisms for enzymatic activity enhancement of organophosphorus hydrolase in functionalized mesoporous silica.

Authors:  Baowei Chen; Chenghong Lei; Yongsoon Shin; Jun Liu
Journal:  Biochem Biophys Res Commun       Date:  2009-10-27       Impact factor: 3.575

4.  300-Fold increase in production of the Zn2+-dependent dechlorinase TrzN in soluble form via apoenzyme stabilization.

Authors:  Colin J Jackson; Christopher W Coppin; Paul D Carr; Alexey Aleksandrov; Matthew Wilding; Elena Sugrue; Joanna Ubels; Michael Paks; Janet Newman; Thomas S Peat; Robyn J Russell; Martin Field; Martin Weik; John G Oakeshott; Colin Scott
Journal:  Appl Environ Microbiol       Date:  2014-04-25       Impact factor: 4.792

5.  Electronic and geometric structures of the organophosphate-degrading enzyme from Agrobacterium radiobacter (OpdA).

Authors:  Fernanda Ely; Kieran S Hadler; Nataša Mitić; Lawrence R Gahan; David L Ollis; Nicholas M Plugis; Marie T Russo; James A Larrabee; Gerhard Schenk
Journal:  J Biol Inorg Chem       Date:  2011-04-13       Impact factor: 3.358

6.  Conformational sampling, catalysis, and evolution of the bacterial phosphotriesterase.

Authors:  C J Jackson; J-L Foo; N Tokuriki; L Afriat; P D Carr; H-K Kim; G Schenk; D S Tawfik; D L Ollis
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-04       Impact factor: 11.205

7.  mRNA secondary structure modulates the translation of organophosphate hydrolase (OPH) in E. coli.

Authors:  Jay Prakash Pandey; Purushotham Gorla; Bramanandam Manavathi; Dayananda Siddavattam
Journal:  Mol Biol Rep       Date:  2007-12-23       Impact factor: 2.316

8.  Molecular dynamics simulations of the detoxification of paraoxon catalyzed by phosphotriesterase.

Authors:  Xin Zhang; Ruibo Wu; Lingchun Song; Yuchun Lin; Menghai Lin; Zexing Cao; Wei Wu; Yirong Mo
Journal:  J Comput Chem       Date:  2009-11-30       Impact factor: 3.376

9.  Crystallization and preliminary X-ray diffraction analysis of the lactonase VmoLac from Vulcanisaeta moutnovskia.

Authors:  Julien Hiblot; Guillaume Gotthard; Charlotte Champion; Eric Chabriere; Mikael Elias
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-10-17

10.  Organophosphate hydrolase in Brevundimonas diminuta is targeted to the periplasmic face of the inner membrane by the twin arginine translocation pathway.

Authors:  Purushotham Gorla; Jay Prakash Pandey; Sunil Parthasarathy; Mike Merrick; Dayananda Siddavattam
Journal:  J Bacteriol       Date:  2009-08-21       Impact factor: 3.490

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