Literature DB >> 7948932

A conserved sequence in internal transcribed spacer 1 of plant nuclear rRNA genes.

J S Liu1, C L Schardl.   

Abstract

A highly conserved sequence was found in rRNA gene internal transcribed spacer 1 (ITS1) among flowering plant species. The sequence, GGCRY-(4 to 7 n)-GYGYCAAGGAA (where Y = C or T; R = G or A) is located in the central region of ITS1, and is present in published sequences from a wide range of flowering plants. The rest of ITS1 is highly variable in sequence. Therefore, the conserved motif within ITS1 may have a key function in the processing of rRNA gene transcripts. Furthermore, identification of such a conserved motif will help facilitate alignment of sequences for phylogenetic analysis.

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Year:  1994        PMID： 7948932     DOI： 10.1007/bf00013763

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN： 0167-4412            Impact factor:   4.076


  23 in total

1.  Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: an example from the compositae.

Authors:  B G Baldwin
Journal:  Mol Phylogenet Evol       Date:  1992-03       Impact factor: 4.286

2.  Nucleotide sequence of the internal transcribed spacer region of rDNA in mountain rye, Secale montanum Guss. (Gramineae).

Authors:  K H Asay; C Hsiao; N J Chatterton; K B Jensen; R R Wang
Journal:  Plant Mol Biol       Date:  1992-10       Impact factor: 4.076

3.  Nucleotide sequence of the internal transcribed spacer region of rDNA in diploid wheat, Triticum speltoides L. (Tausch) Gren. ex Richter (Gramineae).

Authors:  N J Chatterton; C Hsiao; K H Asay; R R Wang; K B Jensen
Journal:  Plant Mol Biol       Date:  1992-10       Impact factor: 4.076

4.  Prediction of RNA secondary structure, including pseudoknotting, by computer simulation.

Authors:  J P Abrahams; M van den Berg; E van Batenburg; C Pleij
Journal:  Nucleic Acids Res       Date:  1990-05-25       Impact factor: 16.971

5.  A conserved core structure in the 18-25S rRNA intergenic region from tobacco, Nicotiana rustica.

Authors:  K Venkateswarlu; R Nazar
Journal:  Plant Mol Biol       Date:  1991-08       Impact factor: 4.076

6.  Nucleotide sequence of the 17S-25S spacer region from rice rDNA.

Authors:  F Takaiwa; K Oono; M Sugiura
Journal:  Plant Mol Biol       Date:  1985-11       Impact factor: 4.076

7.  Nucleotide sequences of the 5.8S rRNA gene and internal transcribed spacer regions in carrot and broad bean ribosomal DNA.

Authors:  Y Yokota; T Kawata; Y Iida; A Kato; S Tanifuji
Journal:  J Mol Evol       Date:  1989-10       Impact factor: 2.395

8.  Nucleotide sequence of the 18S-25S spacer region from rDNA of mung bean.

Authors:  K Schiebel; V Hemleben
Journal:  Nucleic Acids Res       Date:  1989-04-11       Impact factor: 16.971

9.  Fourteen internal transcribed spacers in the circular ribosomal DNA of Euglena gracilis.

Authors:  M N Schnare; J R Cook; M W Gray
Journal:  J Mol Biol       Date:  1990-09-05       Impact factor: 5.469

10.  Nucleotide sequence of the internal transcribed spacer region of rDNA in wheat, Triticum aestivum L. (Gramineae).

Authors:  N J Chatterton; C Hsiao; K H Asay; R R Wang; K B Jensen
Journal:  Plant Mol Biol       Date:  1992-10       Impact factor: 4.076
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  25 in total

1.  Secondary structure models of the nuclear internal transcribed spacer regions and 5.8S rRNA in Calciodinelloideae (Peridiniaceae) and other dinoflagellates.

Authors:  Marc Gottschling; Jörg Plötner
Journal:  Nucleic Acids Res       Date:  2004-01-13       Impact factor: 16.971

2.  Domain II hairpin structure in ITS1 sequences as an aid in differentiating recently evolved animal and plant pathogenic fungi.

Authors:  P D Bridge; T Schlitt; P F Cannon; A G Buddie; M Baker; A M Borman
Journal:  Mycopathologia       Date:  2008-03-14       Impact factor: 2.574

3.  Analysis of the secondary structure of ITS1 in Pectinidae: implications for phylogenetic reconstruction and structural evolution.

Authors:  Shi Wang; Zhenmin Bao; Ning Li; Lingling Zhang; Jingjie Hu
Journal:  Mar Biotechnol (NY)       Date:  2007-02-08       Impact factor: 3.619

4.  Nuclear ribosomal spacer regions in plant phylogenetics: problems and prospects.

Authors:  Péter Poczai; Jaakko Hyvönen
Journal:  Mol Biol Rep       Date:  2009-07-21       Impact factor: 2.316

5.  Extensive 5.8S nrDNA polymorphism in Mammillaria (Cactaceae) with special reference to the identification of pseudogenic internal transcribed spacer regions.

Authors:  Doerte Harpke; Angela Peterson
Journal:  J Plant Res       Date:  2008-03-29       Impact factor: 2.629

6.  Conservation patterns in angiosperm rDNA ITS2 sequences.

Authors:  M A Hershkovitz; E A Zimmer
Journal:  Nucleic Acids Res       Date:  1996-08-01       Impact factor: 16.971

7.  Phylogeny and disjunct distribution: evolution of Saintpaulia (Gesneriaceae).

Authors:  M Möller; Q C Cronk
Journal:  Proc Biol Sci       Date:  1997-12-22       Impact factor: 5.349

8.  The evolution of ribosomal DNA: divergent paralogues and phylogenetic implications.

Authors:  E S Buckler; A Ippolito; T P Holtsford
Journal:  Genetics       Date:  1997-03       Impact factor: 4.562

9.  Analysis of the ribosomal RNA gene repeat from the moss Funaria hygrometrica.

Authors:  I Capesius
Journal:  Plant Mol Biol       Date:  1997-02       Impact factor: 4.076

10.  Molecular phylogeny of 21 tropical bamboo species reconstructed by integrating non-coding internal transcribed spacer (ITS1 and 2) sequences and their consensus secondary structure.

Authors:  Jayadri Sekhar Ghosh; Samik Bhattacharya; Amita Pal
Journal:  Genetica       Date:  2017-04-24       Impact factor: 1.082
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