Literature DB >> 7937991

d(G3T4G3) forms an asymmetric diagonally looped dimeric quadruplex with guanosine 5'-syn-syn-anti and 5'-syn-anti-anti N-glycosidic conformations.

F W Smith1, F W Lau, J Feigon.   

Abstract

The structure formed by the DNA oligonucleotide d(G3T4G3) has been studied by one- and two-dimensional 1H NMR spectroscopy. In NaCl solution, d(G3T4G3), like d(G4T4G4) (Oxy-1.5), forms a dimeric quadruplex with the thymines in loops across the diagonal of the end quartets. Unlike Oxy-1.5, the dimer is not symmetric, and both monomer strands are observed in NMR spectra. Three quartets are formed from the GGG tracts. Glycosidic conformations of the guanines are 5'-syn-syn-anti-(loop)-syn-anti-anti in one strand and 5'-syn-anti-anti-(loop)-syn-syn-anti in the other strand. Thus, the stacking of the quartets (tail-to-tail, head-to-tail) is unlike all previously described fold-back (tail-to-tail, head-to-head) and parallel-stranded (head-to-tail, head-to-tail) quadruplexes.

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Year:  1994        PMID: 7937991      PMCID: PMC45058          DOI: 10.1073/pnas.91.22.10546

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

1.  MyoD binds to the guanine tetrad nucleic acid structure.

Authors:  K Walsh; A Gualberto
Journal:  J Biol Chem       Date:  1992-07-05       Impact factor: 5.157

2.  Solution structure of an unusually stable RNA tetraplex containing G- and U-quartet structures.

Authors:  C Cheong; P B Moore
Journal:  Biochemistry       Date:  1992-09-15       Impact factor: 3.162

3.  Eukaryotic topoisomerase II cleavage of parallel stranded DNA tetraplexes.

Authors:  I K Chung; V B Mehta; J R Spitzner; M T Muller
Journal:  Nucleic Acids Res       Date:  1992-04-25       Impact factor: 16.971

4.  Thermodynamics and structure of a DNA tetraplex: a spectroscopic and calorimetric study of the tetramolecular complexes of d(TG3T) and d(TG3T2G3T).

Authors:  R Jin; B L Gaffney; C Wang; R A Jones; K J Breslauer
Journal:  Proc Natl Acad Sci U S A       Date:  1992-09-15       Impact factor: 11.205

5.  Crystal structure of four-stranded Oxytricha telomeric DNA.

Authors:  C Kang; X Zhang; R Ratliff; R Moyzis; A Rich
Journal:  Nature       Date:  1992-03-12       Impact factor: 49.962

Review 6.  Four-stranded nucleic acid structures 25 years later: from guanosine gels to telomer DNA.

Authors:  W Guschlbauer; J F Chantot; D Thiele
Journal:  J Biomol Struct Dyn       Date:  1990-12

7.  Multinuclear nuclear magnetic resonance studies of Na cation-stabilized complex formed by d(G-G-T-T-T-T-C-G-G) in solution. Implications for G-tetrad structures.

Authors:  Y Wang; C de los Santos; X O Gao; K Greene; D Live; D J Patel
Journal:  J Mol Biol       Date:  1991-12-05       Impact factor: 5.469

8.  Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex.

Authors:  Y Wang; D J Patel
Journal:  Structure       Date:  1993-12-15       Impact factor: 5.006

9.  Quadruplex structure of Oxytricha telomeric DNA oligonucleotides.

Authors:  F W Smith; J Feigon
Journal:  Nature       Date:  1992-03-12       Impact factor: 49.962

10.  Guanine residues in d(T2AG3) and d(T2G4) form parallel-stranded potassium cation stabilized G-quadruplexes with anti glycosidic torsion angles in solution.

Authors:  Y Wang; D J Patel
Journal:  Biochemistry       Date:  1992-09-08       Impact factor: 3.162

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  20 in total

1.  The effect of sodium, potassium and ammonium ions on the conformation of the dimeric quadruplex formed by the Oxytricha nova telomere repeat oligonucleotide d(G(4)T(4)G(4)).

Authors:  P Schultze; N V Hud; F W Smith; J Feigon
Journal:  Nucleic Acids Res       Date:  1999-08-01       Impact factor: 16.971

Review 2.  Natural and pharmacological regulation of telomerase.

Authors:  Jean-Louis Mergny; Jean-François Riou; Patrick Mailliet; Marie-Paule Teulade-Fichou; Eric Gilson
Journal:  Nucleic Acids Res       Date:  2002-02-15       Impact factor: 16.971

3.  Two-repeat Tetrahymena telomeric d(TGGGGTTGGGGT) Sequence interconverts between asymmetric dimeric G-quadruplexes in solution.

Authors:  Anh Tuân Phan; Yasha S Modi; Dinshaw J Patel
Journal:  J Mol Biol       Date:  2004-04-16       Impact factor: 5.469

4.  Bimolecular quadruplexes and their transitions to higher-order molecular structures detected by ESI-FTICR-MS.

Authors:  Xinhua Guo; Shuying Liu; Zhan Yu
Journal:  J Am Soc Mass Spectrom       Date:  2007-05-10       Impact factor: 3.109

5.  Fluorescent dyes specific for quadruplex DNA.

Authors:  H Arthanari; S Basu; T L Kawano; P H Bolton
Journal:  Nucleic Acids Res       Date:  1998-08-15       Impact factor: 16.971

6.  NMR structure refinement and dynamics of the K+-[d(G3T4G3)]2 quadruplex via particle mesh Ewald molecular dynamics simulations.

Authors:  G D Strahan; M A Keniry; R H Shafer
Journal:  Biophys J       Date:  1998-08       Impact factor: 4.033

7.  Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter.

Authors:  Anh Tuân Phan; Yasha S Modi; Dinshaw J Patel
Journal:  J Am Chem Soc       Date:  2004-07-21       Impact factor: 15.419

8.  Structural properties of the [d(G3T4G3)]2 quadruplex: evidence for sequential syn-syn deoxyguanosines.

Authors:  G D Strahan; R H Shafer; M A Keniry
Journal:  Nucleic Acids Res       Date:  1994-12-11       Impact factor: 16.971

9.  The antiproliferative activity of c-myb and c-myc antisense oligonucleotides in smooth muscle cells is caused by a nonantisense mechanism.

Authors:  T L Burgess; E F Fisher; S L Ross; J V Bready; Y X Qian; L A Bayewitch; A M Cohen; C J Herrera; S S Hu; T B Kramer
Journal:  Proc Natl Acad Sci U S A       Date:  1995-04-25       Impact factor: 11.205

10.  Walking a supramolecular tightrope: a self-assembled dodecamer from an 8-aryl-2'-deoxyguanosine derivative.

Authors:  María del C Rivera-Sánchez; Ivonne Andújar-de-Sanctis; Marilyn García-Arriaga; Vladimir Gubala; Gerard Hobley; José M Rivera
Journal:  J Am Chem Soc       Date:  2009-08-05       Impact factor: 15.419

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