Literature DB >> 7937852

Bacterial glutamate racemase has high sequence similarity with myoglobins and forms an equimolar inactive complex with hemin.

S Y Choi1, N Esaki, M Ashiuchi, T Yoshimura, K Soda.   

Abstract

Glutamate racemase (EC 5.1.1.3), an enzyme of microbial origin, shows significant sequence homology with mammalian myoglobins, in particular in the regions corresponding to the E and F helices, which constitute the heme binding pocket of myoglobins. Glutamate racemase binds tightly an equimolar amount of hemin, leading to loss of racemase activity. Although this enzyme shows homology with aspartate racemase, the latter does not bind hemin. The glutamate racemase gene of Pediococcus pentosaceus has a 795-nt open reading frame and encodes 265-amino acid residues, which form a monomeric protein (M(r) 29,000). Neither racemase has cofactors, but they contain essential cysteine residues [Yohda, M., Okada, H. & Kumagai, H. (1991) Biochim. Biophys. Acta 1089, 234-240].

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Year:  1994        PMID: 7937852      PMCID: PMC44974          DOI: 10.1073/pnas.91.21.10144

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  21 in total

1.  Kinetic and structural studies of hydroxyproline 2-epimerase.

Authors:  T H Finlay; E Adams
Journal:  J Biol Chem       Date:  1970-10-25       Impact factor: 5.157

2.  Purification and mechanism of action of proline racemase.

Authors:  G J Cardinale; R H Abeles
Journal:  Biochemistry       Date:  1968-11       Impact factor: 3.162

3.  Mechanism of the reaction catalyzed by glutamate racemase.

Authors:  K A Gallo; M E Tanner; J R Knowles
Journal:  Biochemistry       Date:  1993-04-20       Impact factor: 3.162

4.  Reaction mechanism and structure of the active site of proline racemase.

Authors:  G Rudnick; R H Abeles
Journal:  Biochemistry       Date:  1975-10-07       Impact factor: 3.162

5.  The glutamate racemase activity from Escherichia coli is regulated by peptidoglycan precursor UDP-N-acetylmuramoyl-L-alanine.

Authors:  P Doublet; J van Heijenoort; D Mengin-Lecreulx
Journal:  Biochemistry       Date:  1994-05-03       Impact factor: 3.162

6.  The Escherichia coli mutant requiring D-glutamic acid is the result of mutations in two distinct genetic loci.

Authors:  T J Dougherty; J A Thanassi; M J Pucci
Journal:  J Bacteriol       Date:  1993-01       Impact factor: 3.490

7.  Isotope effects and the identification of catalytic residues in the reaction catalyzed by glutamate racemase.

Authors:  M E Tanner; K A Gallo; J R Knowles
Journal:  Biochemistry       Date:  1993-04-20       Impact factor: 3.162

8.  A myoglobin evolved from indoleamine 2,3-dioxygenase.

Authors:  T Suzuki; T Takagi
Journal:  J Mol Biol       Date:  1992-11-20       Impact factor: 5.469

9.  A new antitumor enzyme, L-lysine alpha-oxidase from Trichoderma viride. Purification and enzymological properties.

Authors:  H Kusakabe; K Kodama; A Kuninaka; H Yoshino; H Misono; K Soda
Journal:  J Biol Chem       Date:  1980-02-10       Impact factor: 5.157

10.  Expression of glr (murI, dga) gene encoding glutamate racemase in Escherichia coli.

Authors:  T Yoshimura; M Ashiuchi; N Esaki; C Kobatake; S Y Choi; K Soda
Journal:  J Biol Chem       Date:  1993-11-15       Impact factor: 5.157

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  7 in total

1.  Molecular cloning, expression and characterization of pyridoxamine-pyruvate aminotransferase.

Authors:  Yu Yoshikane; Nana Yokochi; Kouhei Ohnishi; Hideyuki Hayashi; Toshiharu Yagi
Journal:  Biochem J       Date:  2006-06-15       Impact factor: 3.857

2.  Alignment of 700 globin sequences: extent of amino acid substitution and its correlation with variation in volume.

Authors:  O H Kapp; L Moens; J Vanfleteren; C N Trotman; T Suzuki; S N Vinogradov
Journal:  Protein Sci       Date:  1995-10       Impact factor: 6.725

3.  Serine racemase: a glial enzyme synthesizing D-serine to regulate glutamate-N-methyl-D-aspartate neurotransmission.

Authors:  H Wolosker; S Blackshaw; S H Snyder
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-09       Impact factor: 11.205

4.  Isolation and characterization of a novel lysine racemase from a soil metagenomic library.

Authors:  I-Chien Chen; Wei-De Lin; Shin-Kuang Hsu; Venkatesan Thiruvengadam; Wen-Hwei Hsu
Journal:  Appl Environ Microbiol       Date:  2009-06-05       Impact factor: 4.792

Review 5.  Glutamate racemase as a target for drug discovery.

Authors:  Stewart L Fisher
Journal:  Microb Biotechnol       Date:  2008-05-11       Impact factor: 5.813

6.  Crystal structures of lysine-preferred racemases, the non-antibiotic selectable markers for transgenic plants.

Authors:  Hsin-Mao Wu; Yi-Chia Kuan; Chia-Han Chu; Wen-Hwei Hsu; Wen-Ching Wang
Journal:  PLoS One       Date:  2012-10-31       Impact factor: 3.240

Review 7.  Lessons from the post-genomic era: Globin diversity beyond oxygen binding and transport.

Authors:  Anna Keppner; Darko Maric; Miguel Correia; Teng Wei Koay; Ilaria M C Orlando; Serge N Vinogradov; David Hoogewijs
Journal:  Redox Biol       Date:  2020-08-14       Impact factor: 11.799

  7 in total

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