Literature DB >> 19502445

Isolation and characterization of a novel lysine racemase from a soil metagenomic library.

I-Chien Chen1, Wei-De Lin, Shin-Kuang Hsu, Venkatesan Thiruvengadam, Wen-Hwei Hsu.   

Abstract

A lysine racemase (lyr) gene was isolated from a soil metagenome by functional complementation for the first time by using Escherichia coli BCRC 51734 cells as the host and d-lysine as the selection agent. The lyr gene consisted of a 1,182-bp nucleotide sequence encoding a protein of 393 amino acids with a molecular mass of about 42.7 kDa. The enzyme exhibited higher specific activity toward lysine in the l-lysine-to-d-lysine direction than in the reverse reaction.

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Year:  2009        PMID: 19502445      PMCID: PMC2725492          DOI: 10.1128/AEM.00074-09

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  39 in total

1.  Distribution of lysine racemase in bacteria.

Authors:  H T HUANG; J W DAVISSON
Journal:  J Bacteriol       Date:  1958-11       Impact factor: 3.490

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Authors:  A ICHIHARA; E A ICHIHARA
Journal:  J Biochem       Date:  1961-02       Impact factor: 3.387

3.  Glutamic acid racemase from Lactobacillus arabinosus.

Authors:  L GLASER
Journal:  J Biol Chem       Date:  1960-07       Impact factor: 5.157

4.  D-Alanine formation; a racemase in Streptococcus faecalis.

Authors:  W A WOOD; I C GUNSALUS
Journal:  J Biol Chem       Date:  1951-05       Impact factor: 5.157

5.  Factors influencing growth on L-lysine by Pseudomonas. Regulation of terminal enzymes in the delta-aminovalerate pathway and growth stimulation by alpha ketoglutarate.

Authors:  Y F Chang; E Adams
Journal:  J Biol Chem       Date:  1977-11-25       Impact factor: 5.157

6.  Crystal structure of putative N-acetyl-gamma-glutamyl-phosphate reductase (AK071544) from rice (Oryza sativa).

Authors:  Tsuyoshi Nonaka; Akiko Kita; Jun Miura-Ohnuma; Etsuko Katoh; Noritoshi Inagaki; Toshimasa Yamazaki; Kunio Miki
Journal:  Proteins       Date:  2005-12-01

7.  D-lysine catabolic pathway in Pseudomonas putida: interrelations with L-lysine catabolism.

Authors:  Y F Chang; E Adams
Journal:  J Bacteriol       Date:  1974-02       Impact factor: 3.490

8.  Catabolism of L-lysine by Pseudomonas aeruginosa.

Authors:  J C Fothergill; J R Guest
Journal:  J Gen Microbiol       Date:  1977-03

9.  Determination of free amino acid enantiomers in rat brain and serum by high-performance liquid chromatography after derivatization with N-tert.-butyloxycarbonyl-L-cysteine and o-phthaldialdehyde.

Authors:  A Hashimoto; T Nishikawa; T Oka; K Takahashi; T Hayashi
Journal:  J Chromatogr       Date:  1992-11-06

10.  NHEJ protects mycobacteria in stationary phase against the harmful effects of desiccation.

Authors:  Robert S Pitcher; Andrew J Green; Anna Brzostek; Malgorzata Korycka-Machala; Jaroslaw Dziadek; Aidan J Doherty
Journal:  DNA Repair (Amst)       Date:  2007-03-13
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  7 in total

1.  Size Does Matter: Application-driven Approaches for Soil Metagenomics.

Authors:  Kavita S Kakirde; Larissa C Parsley; Mark R Liles
Journal:  Soil Biol Biochem       Date:  2010-11-01       Impact factor: 7.609

2.  Lysine racemase: a novel non-antibiotic selectable marker for plant transformation.

Authors:  I-Chieh Chen; Venkatesan Thiruvengadam; Wei-De Lin; Ho-Hsiung Chang; Wen-Hwei Hsu
Journal:  Plant Mol Biol       Date:  2009-10-16       Impact factor: 4.076

3.  Identification and biochemical characterization of threonine dehydratase from the hyperthermophile Thermotoga maritima.

Authors:  Tetsuya Miyamoto; Masumi Katane; Yasuaki Saitoh; Masae Sekine; Kumiko Sakai-Kato; Hiroshi Homma
Journal:  Amino Acids       Date:  2021-05-03       Impact factor: 3.520

Review 4.  The great screen anomaly--a new frontier in product discovery through functional metagenomics.

Authors:  David Matthias Ekkers; Mariana Silvia Cretoiu; Anna Maria Kielak; Jan Dirk van Elsas
Journal:  Appl Microbiol Biotechnol       Date:  2011-12-22       Impact factor: 4.813

Review 5.  Bioprospecting potential of the soil metagenome: novel enzymes and bioactivities.

Authors:  Myung Hwan Lee; Seon-Woo Lee
Journal:  Genomics Inform       Date:  2013-09-30

Review 6.  Achievements and new knowledge unraveled by metagenomic approaches.

Authors:  Carola Simon; Rolf Daniel
Journal:  Appl Microbiol Biotechnol       Date:  2009-09-16       Impact factor: 4.813

7.  Crystal structures of lysine-preferred racemases, the non-antibiotic selectable markers for transgenic plants.

Authors:  Hsin-Mao Wu; Yi-Chia Kuan; Chia-Han Chu; Wen-Hwei Hsu; Wen-Ching Wang
Journal:  PLoS One       Date:  2012-10-31       Impact factor: 3.240

  7 in total

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