Literature DB >> 7929228

Adipocyte lipid-binding protein complexed with arachidonic acid. Titration calorimetry and X-ray crystallographic studies.

J M LaLonde1, M A Levenson, J J Roe, D A Bernlohr, L J Banaszak.   

Abstract

The association of the adipocyte lipid-binding protein (ALBP) with arachidonic acid (all cis, 20:4 delta 5,8,11,14) and oleic acid (cis, 18:1 delta 9) has been examined by titration calorimentry. In addition, the crystal structure of ALBP with bound arachidonic acid has also been obtained. Crystallographic analysis of the arachidonic acid.ALBP complex along with the previously reported oleic acid-ALBP structure (Xu, Z., Bernlohr, D. A., and Banaszak, L. J. (1993) J. Biol. Chem. 268, 7874-7884) provides a framework for the molecular examination of protein-lipid association. Isothermal titration calorimetry revealed high affinity association of both unsaturated fatty acids with the protein. The calorimetric data yielded the following thermodynamic parameters for arachidonic acid: Kd = 4.4 microM, n = 0.8, delta G = -7370 cal/mol, delta H = -6770 cal/mol, and T delta S = +600 cal/mol. For oleic acid, the thermodynamic parameters were Kd = 2.4 microM, n = 0.9, delta G = -7770 cal/mol, delta H = -6050 cal/mol, and T delta S = +1720 cal/mol. The identification of thermodynamically dominating enthalpic factors for both fatty acids are consistent with the crystallographic studies demonstrating the interaction of the fatty acid carboxylate with a combination of Arg106, Arg126, and Tyr128. The crystallographic refinement of the protein-arachidonate complex was carried out to 1.6 A with the resultant R factor of 0.19. Within the cavity of the crystalline binding protein, the arachidonate was found in a hairpin conformation. The conformation of the bound ligand is consistent with acceptable torsional angles and the four cis double bonds in arachidonate. These results demonstrate that arachidonate is a ligand for ALBP. They provide thermodynamic and structural data concerning the physical basis for protein-lipid interaction and suggest that intracellular lipid-binding proteins may mediate the biological effects of polyunsaturated fatty acids in vivo.

Entities:  

Mesh:

Substances:

Year:  1994        PMID: 7929228     DOI: 10.2210/pdb1adl/pdb

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  23 in total

1.  Fatty acid binding proteins: same structure but different binding mechanisms? Molecular dynamics simulations of intestinal fatty acid binding protein.

Authors:  Ran Friedman; Esther Nachliel; Menachem Gutman
Journal:  Biophys J       Date:  2005-12-16       Impact factor: 4.033

Review 2.  Intrinsically disordered proteins and their environment: effects of strong denaturants, temperature, pH, counter ions, membranes, binding partners, osmolytes, and macromolecular crowding.

Authors:  Vladimir N Uversky
Journal:  Protein J       Date:  2009-10       Impact factor: 2.371

3.  Two distinct types of fatty acid-binding protein are expressed in heart ventricle of Antarctic teleost fishes.

Authors:  M E Vayda; R L Londraville; R E Cashon; L Costello; B D Sidell
Journal:  Biochem J       Date:  1998-02-15       Impact factor: 3.857

4.  Molecular modeling and functional confirmation of a predicted fatty acid binding site of mitochondrial aspartate aminotransferase.

Authors:  Michael W Bradbury; Decherd Stump; Frank Guarnieri; Paul D Berk
Journal:  J Mol Biol       Date:  2011-07-22       Impact factor: 5.469

Review 5.  Insights into binding of fatty acids by fatty acid binding proteins.

Authors:  Thorsten Hanhoff; Christian Lücke; Friedrich Spener
Journal:  Mol Cell Biochem       Date:  2002-10       Impact factor: 3.396

6.  Interaction Analysis of FABP4 Inhibitors by X-ray Crystallography and Fragment Molecular Orbital Analysis.

Authors:  Uno Tagami; Kazutoshi Takahashi; Shunsuke Igarashi; Chieko Ejima; Tomomi Yoshida; Sen Takeshita; Wataru Miyanaga; Masayuki Sugiki; Munetaka Tokumasu; Toshihiro Hatanaka; Tatsuki Kashiwagi; Kohki Ishikawa; Hiroshi Miyano; Toshimi Mizukoshi
Journal:  ACS Med Chem Lett       Date:  2016-02-16       Impact factor: 4.345

7.  Characterization of the sources of protein-ligand affinity: 1-sulfonato-8-(1')anilinonaphthalene binding to intestinal fatty acid binding protein.

Authors:  W R Kirk; E Kurian; F G Prendergast
Journal:  Biophys J       Date:  1996-01       Impact factor: 4.033

8.  Expression, purification, crystallization and structure of human adipocyte lipid-binding protein (aP2).

Authors:  Eric Marr; Mark Tardie; Maynard Carty; Tracy Brown Phillips; Ing-Kae Wang; Walt Soeller; Xiayang Qiu; George Karam
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-10-25

9.  Binding site polarity and ligand affinity of homologous fatty acid-binding proteins from animals with different body temperatures.

Authors:  R L Londraville; J Storch; B D Sidell
Journal:  Mol Cell Biochem       Date:  1996-06-07       Impact factor: 3.396

10.  Binding affinity prediction with property-encoded shape distribution signatures.

Authors:  Sourav Das; Michael P Krein; Curt M Breneman
Journal:  J Chem Inf Model       Date:  2010-02-22       Impact factor: 4.956

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.