Literature DB >> 7912438

"RFLP subtraction": a method for making libraries of polymorphic markers.

M Rosenberg1, M Przybylska, D Straus.   

Abstract

We developed a method, "RFLP subtraction," that isolates large numbers of unique sequence restriction fragment length polymorphisms (RFLPs) in a single experiment. The technique purifies small restriction fragments from one genome containing sequences that reside on large fragments in a related genome. We first isolate samples containing the small restriction fragments from two polymorphic strains. Subtractive hybridization then removes the fragments that are present in both samples. The remaining sequences are RFLPs: they occur on small fragments in one strain but not in the other. Here we use RFLP subtraction to make a library of hundreds of unique sequence RFLPs from two inbred mouse strains. We analyze and map a subset of the RFLPs and show that the genetic linkage of these markers can be rapidly determined by an efficient dot blot mapping technique. Several other potential applications of RFLP subtraction, including isolating region specific markers, are discussed.

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Year:  1994        PMID: 7912438      PMCID: PMC44148          DOI: 10.1073/pnas.91.13.6113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  23 in total

1.  DNA amplification fingerprinting using very short arbitrary oligonucleotide primers.

Authors:  G Caetano-Anollés; B J Bassam; P M Gresshoff
Journal:  Biotechnology (N Y)       Date:  1991-06

2.  Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations.

Authors:  R W Michelmore; I Paran; R V Kesseli
Journal:  Proc Natl Acad Sci U S A       Date:  1991-11-01       Impact factor: 11.205

3.  Genomic subtraction for cloning DNA corresponding to deletion mutations.

Authors:  D Straus; F M Ausubel
Journal:  Proc Natl Acad Sci U S A       Date:  1990-03       Impact factor: 11.205

4.  DNA polymorphisms amplified by arbitrary primers are useful as genetic markers.

Authors:  J G Williams; A R Kubelik; K J Livak; J A Rafalski; S V Tingey
Journal:  Nucleic Acids Res       Date:  1990-11-25       Impact factor: 16.971

5.  A method for difference cloning: gene amplification following subtractive hybridization.

Authors:  I Wieland; G Bolger; G Asouline; M Wigler
Journal:  Proc Natl Acad Sci U S A       Date:  1990-04       Impact factor: 11.205

6.  Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction.

Authors:  J L Weber; P E May
Journal:  Am J Hum Genet       Date:  1989-03       Impact factor: 11.025

7.  Rapid identification of markers linked to a Pseudomonas resistance gene in tomato by using random primers and near-isogenic lines.

Authors:  G B Martin; J G Williams; S D Tanksley
Journal:  Proc Natl Acad Sci U S A       Date:  1991-03-15       Impact factor: 11.205

8.  Y-encoded, species-specific DNA in mice: evidence that the Y chromosome exists in two polymorphic forms in inbred strains.

Authors:  E E Lamar; E Palmer
Journal:  Cell       Date:  1984-05       Impact factor: 41.582

9.  A general method of gene isolation.

Authors:  T Y Shih; M A Martin
Journal:  Proc Natl Acad Sci U S A       Date:  1973-06       Impact factor: 11.205

Review 10.  Construction of a genetic linkage map in man using restriction fragment length polymorphisms.

Authors:  D Botstein; R L White; M Skolnick; R W Davis
Journal:  Am J Hum Genet       Date:  1980-05       Impact factor: 11.025

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  10 in total

1.  Cloning of polymorphisms (COP): enrichment of polymorphic sequences from complex genomes.

Authors:  J Li; F Wang; V Zabarovska; C Wahlestedt; E R Zabarovsky
Journal:  Nucleic Acids Res       Date:  2000-01-15       Impact factor: 16.971

2.  Diversity arrays: a solid state technology for sequence information independent genotyping.

Authors:  D Jaccoud; K Peng; D Feinstein; A Kilian
Journal:  Nucleic Acids Res       Date:  2001-02-15       Impact factor: 16.971

3.  Screening of gene-associated polymorphisms by use of in-gel competitive reassociation and EST (cDNA) array hybridization.

Authors:  Koshichi Gotoh; Michio Oishi
Journal:  Genome Res       Date:  2003-03       Impact factor: 9.043

4.  NotI subtraction and NotI-specific microarrays to detect copy number and methylation changes in whole genomes.

Authors:  Jingfeng Li; Alexei Protopopov; Fuli Wang; Vera Senchenko; Valentin Petushkov; Olga Vorontsova; Lev Petrenko; Veronika Zabarovska; Olga Muravenko; Eleonora Braga; Lev Kisselev; Michael I Lerman; Vladimir Kashuba; George Klein; Ingemar Ernberg; Claes Wahlestedt; Eugene R Zabarovsky
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-29       Impact factor: 11.205

5.  Subtracted, unique-sequence, in situ hybridization: experimental and diagnostic applications.

Authors:  J M Davison; T W Morgan; B L Hsi; S Xiao; J A Fletcher
Journal:  Am J Pathol       Date:  1998-11       Impact factor: 4.307

6.  Positional cloning without a genome map: using 'Targeted RFLP Subtraction' to isolate dense markers tightly linked to the regA locus of Volvox carteri.

Authors:  J Corrette-Bennett; M Rosenberg; M Przybylska; E Ananiev; D Straus
Journal:  Nucleic Acids Res       Date:  1998-04-01       Impact factor: 16.971

7.  Ligation-mediated PCR amplification of specific fragments from a class-II restriction endonuclease total digest.

Authors:  R A Guilfoyle; C L Leeck; K D Kroening; L M Smith; Z Guo
Journal:  Nucleic Acids Res       Date:  1997-05-01       Impact factor: 16.971

Review 8.  From mutation mapping to phenotype cloning.

Authors:  J J Jonsson; S M Weissman
Journal:  Proc Natl Acad Sci U S A       Date:  1995-01-03       Impact factor: 11.205

9.  An Ac-like transposable element family with transcriptionally active Y-linked copies in the white campion, Silene latifolia.

Authors:  Ellen J Pritham; Y Hi Zhang; Cédric Feschotte; Rick V Kesseli
Journal:  Genetics       Date:  2003-10       Impact factor: 4.562

10.  Cytological and molecular characterization of oat x maize partial hybrids.

Authors:  O Riera-Lizarazu; H W Rines; R L Phillips
Journal:  Theor Appl Genet       Date:  1996-07       Impact factor: 5.699

  10 in total

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