Literature DB >> 7892233

A method for probing the topography and interactions of proteins: footprinting of myoglobin.

M Zhong1, L Lin, N R Kallenbach.   

Abstract

We describe a procedure for mapping residues on the surface of a protein molecule to its sequence, using a scheme that is analogous to nucleic acid footprinting. The protein is end labeled radioactively and subjected to limited proteolysis, and the products are analyzed by denaturing polyacrylamide gel electrophoresis and autoradiography. The method is tested with the heme protein myoglobin and applied to mapping the (unknown) surface of the molecule lacking the heme group: apomyoglobin. Sites of protein-protein interaction can be identified, as illustrated by footprinting the association between myoglobin and an anti-myoglobin monoclonal antibody.

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Year:  1995        PMID: 7892233      PMCID: PMC42433          DOI: 10.1073/pnas.92.6.2111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

1.  RELATIVE CONFORMATIONS OF SPERM WHALE METMYOGLOBIN AND APOMYOGLOBIN IN SOLUTION.

Authors:  E BRESLOW; S BEYCHOK; K D HARDMAN; F R GURD
Journal:  J Biol Chem       Date:  1965-01       Impact factor: 5.157

2.  Role of multiple basic residues in determining the substrate specificity of cyclic AMP-dependent protein kinase.

Authors:  B E Kemp; D J Graves; E Benjamini; E G Krebs
Journal:  J Biol Chem       Date:  1977-07-25       Impact factor: 5.157

3.  Interaction cloning: identification of a helix-loop-helix zipper protein that interacts with c-Fos.

Authors:  M A Blanar; W J Rutter
Journal:  Science       Date:  1992-05-15       Impact factor: 47.728

Review 4.  Areas, volumes, packing and protein structure.

Authors:  F M Richards
Journal:  Annu Rev Biophys Bioeng       Date:  1977

5.  Mapping protein domains involved in macromolecular interactions: a novel protein footprinting approach.

Authors:  E Heyduk; T Heyduk
Journal:  Biochemistry       Date:  1994-08-16       Impact factor: 3.162

6.  High-resolution crystal structures of distal histidine mutants of sperm whale myoglobin.

Authors:  M L Quillin; R M Arduini; J S Olson; G N Phillips
Journal:  J Mol Biol       Date:  1993-11-05       Impact factor: 5.469

7.  Molecular mechanisms of acid denaturation. The role of histidine residues in the partial unfolding of apomyoglobin.

Authors:  D Barrick; F M Hughson; R L Baldwin
Journal:  J Mol Biol       Date:  1994-04-15       Impact factor: 5.469

8.  Radiolytic footprinting. Beta rays, gamma photons, and fast neutrons probe DNA-protein interactions.

Authors:  J Franchet-Beuzit; M Spotheim-Maurizot; R Sabattier; B Blazy-Baudras; M Charlier
Journal:  Biochemistry       Date:  1993-03-02       Impact factor: 3.162

9.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

10.  The native state of apomyoglobin described by proton NMR spectroscopy: interaction with the paramagnetic probe HyTEMPO and the fluorescent dye ANS.

Authors:  M J Cocco; J T Lecomte
Journal:  Protein Sci       Date:  1994-02       Impact factor: 6.725

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  8 in total

1.  Isotope-coded affinity tags with tunable reactivities for protein footprinting.

Authors:  Eric S Underbakke; Yimin Zhu; Laura L Kiessling
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

2.  Role of the S3-S4 linker in Shaker potassium channel activation.

Authors:  R Mathur; J Zheng; Y Yan; F J Sigworth
Journal:  J Gen Physiol       Date:  1997-02       Impact factor: 4.086

3.  Proteolytic mapping of heat shock transcription factor domains.

Authors:  M Zhong; C Wu
Journal:  Protein Sci       Date:  1996-12       Impact factor: 6.725

4.  Conformational properties of native sperm whale apomyoglobin in solution.

Authors:  J T Lecomte; S F Sukits; S Bhattacharya; C J Falzone
Journal:  Protein Sci       Date:  1999-07       Impact factor: 6.725

5.  Protein footprinting in a complex milieu: identifying the interaction surfaces of the chemotaxis adaptor protein CheW.

Authors:  Eric S Underbakke; Yimin Zhu; Laura L Kiessling
Journal:  J Mol Biol       Date:  2011-04-02       Impact factor: 5.469

Review 6.  Oxidative protein labeling in mass-spectrometry-based proteomics.

Authors:  Julien Roeser; Rainer Bischoff; Andries P Bruins; Hjalmar P Permentier
Journal:  Anal Bioanal Chem       Date:  2010-02-13       Impact factor: 4.142

7.  Laser-Initiated Radical Trifluoromethylation of Peptides and Proteins: Application to Mass-Spectrometry-Based Protein Footprinting.

Authors:  Ming Cheng; Bojie Zhang; Weidong Cui; Michael L Gross
Journal:  Angew Chem Int Ed Engl       Date:  2017-10-05       Impact factor: 15.336

8.  Oxidative functionalization of aliphatic and aromatic amino acid derivatives with H2O2 catalyzed by a nonheme imine based iron complex.

Authors:  Barbara Ticconi; Arianna Colcerasa; Stefano Di Stefano; Osvaldo Lanzalunga; Andrea Lapi; Marco Mazzonna; Giorgio Olivo
Journal:  RSC Adv       Date:  2018-05-23       Impact factor: 3.361

  8 in total

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