Literature DB >> 7882161

[Sequencing of DNA by mechanical opening of the double helix: a theoretical evaluation].

J L Viovy1, C Heller, F Caron, P Cluzel, D Chatenay.   

Abstract

We propose and evaluate a model experiment, in which the sequence of a DNA fragment is determined by mechanically opening the double helix in a controlled manner (e.g. pulling on the 3' end of one strand), and measuring the variation of the force exerted by the base pairs on a nanodynamometer (e.g. on a bead in an optical trap or a glass microneedle attached to the 5' end of the other strand). We show that the major limitation of the approach is the longitudinal elasticity of the already sequenced single strand sections, which soften the displacement-force function, and facilitate spontaneous thermal opening of the base pairs.

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Year:  1994        PMID: 7882161

Source DB:  PubMed          Journal:  C R Acad Sci III        ISSN: 0764-4469


  7 in total

1.  Unzipping DNA with optical tweezers: high sequence sensitivity and force flips.

Authors:  U Bockelmann; Ph Thomen; B Essevaz-Roulet; V Viasnoff; F Heslot
Journal:  Biophys J       Date:  2002-03       Impact factor: 4.033

2.  Dynamics of the DNA duplex formation studied by single molecule force measurements.

Authors:  U Bockelmann; P Thomen; F Heslot
Journal:  Biophys J       Date:  2004-08-31       Impact factor: 4.033

3.  Theoretical study of sequence-dependent nanopore unzipping of DNA.

Authors:  U Bockelmann; V Viasnoff
Journal:  Biophys J       Date:  2008-01-04       Impact factor: 4.033

4.  Mechanical separation of the complementary strands of DNA.

Authors:  B Essevaz-Roulet; U Bockelmann; F Heslot
Journal:  Proc Natl Acad Sci U S A       Date:  1997-10-28       Impact factor: 11.205

5.  Twist and shout (and pull): molecular chiropractors undo DNA.

Authors:  J F Marko
Journal:  Proc Natl Acad Sci U S A       Date:  1997-10-28       Impact factor: 11.205

6.  Can we model DNA at the mesoscale?

Authors:  S Cuesta-López; J Errami; F Falo; M Peyrard
Journal:  J Biol Phys       Date:  2005-12       Impact factor: 1.365

7.  Mapping of single-base differences between two DNA strands in a single molecule using holliday junction nanomechanics.

Authors:  Camille Brème; François Heslot
Journal:  PLoS One       Date:  2013-02-05       Impact factor: 3.240

  7 in total

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