Literature DB >> 7866869

Resonance assignment strategies for the analysis of NMR spectra of proteins.

M F Leopold1, J L Urbauer, A J Wand.   

Abstract

Determination of the high resolution solution structure of a protein using nuclear magnetic resonance (NMR) spectroscopy requires that resonances observed in the NMR spectra be unequivocally assigned to individual nuclei of the protein. With the advent of modern, two-dimensional NMR techniques arose methodologies for assigning the 1H resonances based on 2D, homonuclear 1H NMR experiments. These include the sequential assignment strategy and the main chain directed strategy. These basic strategies have been extended to include newer 3D homonuclear experiments and 2D and 3D heteronuclear resolved and edited methods. Most recently a novel, conceptually new approach to the problem has been introduced that relies on heteronuclear, multidimensional so-called triple resonance experiments for both backbone and sidechain resonance assignments in proteins. This article reviews the evolution of strategies for the assignment of resonances of proteins.

Entities:  

Mesh:

Substances:

Year:  1994        PMID: 7866869     DOI: 10.1007/BF02789290

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  51 in total

1.  Assignment of the side-chain 1H and 13C resonances of interleukin-1 beta using double- and triple-resonance heteronuclear three-dimensional NMR spectroscopy.

Authors:  G M Clore; A Bax; P C Driscoll; P T Wingfield; A M Gronenborn
Journal:  Biochemistry       Date:  1990-09-04       Impact factor: 3.162

2.  An efficient 3D NMR technique for correlating the proton and 15N backbone amide resonances with the alpha-carbon of the preceding residue in uniformly 15N/13C enriched proteins.

Authors:  A Bax; M Ikura
Journal:  J Biomol NMR       Date:  1991-05       Impact factor: 2.835

3.  Sequential resonance assignments in protein 1H nuclear magnetic resonance spectra. Basic pancreatic trypsin inhibitor.

Authors:  G Wagner; K Wüthrich
Journal:  J Mol Biol       Date:  1982-03-05       Impact factor: 5.469

4.  Sequential resonance assignments in protein 1H nuclear magnetic resonance spectra. Computation of sterically allowed proton-proton distances and statistical analysis of proton-proton distances in single crystal protein conformations.

Authors:  M Billeter; W Braun; K Wüthrich
Journal:  J Mol Biol       Date:  1982-03-05       Impact factor: 5.469

5.  Sequence-specific 1H NMR assignments and secondary structure in solution of Escherichia coli trp repressor.

Authors:  C H Arrowsmith; R Pachter; R B Altman; S B Iyer; O Jardetzky
Journal:  Biochemistry       Date:  1990-07-10       Impact factor: 3.162

6.  1H, 15N, 13C, and 13CO assignments of human interleukin-4 using three-dimensional double- and triple-resonance heteronuclear magnetic resonance spectroscopy.

Authors:  R Powers; D S Garrett; C J March; E A Frieden; A M Gronenborn; G M Clore
Journal:  Biochemistry       Date:  1992-05-05       Impact factor: 3.162

7.  Amino acid type determination in the sequential assignment procedure of uniformly 13C/15N-enriched proteins.

Authors:  S Grzesiek; A Bax
Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

8.  NMR sequential assignment of Escherichia coli thioredoxin utilizing random fractional deuteriation.

Authors:  D M LeMaster; F M Richards
Journal:  Biochemistry       Date:  1988-01-12       Impact factor: 3.162

9.  A new 3D HN(CA)HA experiment for obtaining fingerprint HN-Halpha peaks in 15N- and 13C-labeled proteins.

Authors:  R T Clubb; V Thanabal; G Wagner
Journal:  J Biomol NMR       Date:  1992-03       Impact factor: 2.835

10.  Statistical strategy for stereospecific hydrogen NMR assignments: validation procedures for the floating prochirality method.

Authors:  R A Beckman; S Litwin; A J Wand
Journal:  J Biomol NMR       Date:  1993-11       Impact factor: 2.835

View more
  10 in total

1.  Probabilistic Identification of Spin Systems and their Assignments including Coil-Helix Inference as Output (PISTACHIO).

Authors:  Hamid R Eghbalnia; Arash Bahrami; Liya Wang; Amir Assadi; John L Markley
Journal:  J Biomol NMR       Date:  2005-07       Impact factor: 2.835

2.  Spectral fitting for signal assignment and structural analysis of uniformly 13C-labeled solid proteins by simulated annealing based on chemical shifts and spin dynamics.

Authors:  Yoh Matsuki; Hideo Akutsu; Toshimichi Fujiwara
Journal:  J Biomol NMR       Date:  2007-07-06       Impact factor: 2.835

Review 3.  Protein complexes studied by NMR spectroscopy.

Authors:  A J Wand; S W Englander
Journal:  Curr Opin Biotechnol       Date:  1996-08       Impact factor: 9.740

4.  A Noncanonical Binding Site in the EVH1 Domain of Vasodilator-Stimulated Phosphoprotein Regulates Its Interactions with the Proline Rich Region of Zyxin.

Authors:  Lucila Andrea Acevedo; Alexander I Greenwood; Linda K Nicholson
Journal:  Biochemistry       Date:  2017-08-23       Impact factor: 3.162

5.  Backbone resonance assignment and order tensor estimation using residual dipolar couplings.

Authors:  Paul Shealy; Yizhou Liu; Mikhail Simin; Homayoun Valafar
Journal:  J Biomol NMR       Date:  2011-06-12       Impact factor: 2.835

6.  NMR-profiles of protein solutions.

Authors:  Bill Pedrini; Pedro Serrano; Biswaranjan Mohanty; Michael Geralt; Kurt Wüthrich
Journal:  Biopolymers       Date:  2013-11       Impact factor: 2.505

7.  A structurally dynamic N-terminal helix is a key functional determinant in staphylococcal complement inhibitor (SCIN) proteins.

Authors:  Brandon L Garcia; Brady J Summers; Kasra X Ramyar; Apostolia Tzekou; Zhuoer Lin; Daniel Ricklin; John D Lambris; John H Laity; Brian V Geisbrecht
Journal:  J Biol Chem       Date:  2012-12-11       Impact factor: 5.157

8.  Automated probabilistic method for assigning backbone resonances of (13C,15N)-labeled proteins.

Authors:  J A Lukin; A P Gove; S N Talukdar; C Ho
Journal:  J Biomol NMR       Date:  1997-02       Impact factor: 2.835

9.  The structure, stability and pheromone binding of the male mouse protein sex pheromone darcin.

Authors:  Marie M Phelan; Lynn McLean; Stuart D Armstrong; Jane L Hurst; Robert J Beynon; Lu-Yun Lian
Journal:  PLoS One       Date:  2014-10-03       Impact factor: 3.240

10.  Insights to Human γD-Crystallin Unfolding by NMR Spectroscopy and Molecular Dynamics Simulations.

Authors:  Shu-Shun Hsueh; S-S Steven Wang; Shu-Han Chen; Chia-Lin Wang; W Josephine Wu; Ta-Hsien Lin
Journal:  Int J Mol Sci       Date:  2022-01-29       Impact factor: 5.923

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.