Literature DB >> 7851521

A common topology of proteins catalyzing ATP-triggered reactions.

M Yoshida1, T Amano.   

Abstract

A protein fold, six parallel beta strands surrounding the central alpha helix, is likely to be a common structure in protein families known to have a typical set of nucleotide binding consensus sequence motifs A and B and to catalyze ATP-triggered reactions. According to this ATP-triggered protein fold, the conserved Glu (or Asp), which acts as a general base to activate a water molecule for an in-line attack of the gamma-phosphate, is at the exit of the second beta strand. The fifth beta strand may be involved in propagation of conformational change triggered by ATP hydrolysis.

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Year:  1995        PMID: 7851521     DOI: 10.1016/0014-5793(94)01438-7

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  18 in total

1.  Nucleotide binding and autophosphorylation of the clock protein KaiC as a circadian timing process of cyanobacteria.

Authors:  T Nishiwaki; H Iwasaki; M Ishiura; T Kondo
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-04       Impact factor: 11.205

2.  Cooperative, ATP-dependent association of the nucleotide binding cassettes during the catalytic cycle of ATP-binding cassette transporters.

Authors:  Jonathan E Moody; Linda Millen; Derk Binns; John F Hunt; Philip J Thomas
Journal:  J Biol Chem       Date:  2002-04-18       Impact factor: 5.157

3.  Sequence analysis of bacteriophage T4 DNA packaging/terminase genes 16 and 17 reveals a common ATPase center in the large subunit of viral terminases.

Authors:  Michael S Mitchell; Shigenobu Matsuzaki; Shosuke Imai; Venigalla B Rao
Journal:  Nucleic Acids Res       Date:  2002-09-15       Impact factor: 16.971

4.  gamma-Secretase substrate selectivity can be modulated directly via interaction with a nucleotide-binding site.

Authors:  Patrick C Fraering; Wenjuan Ye; Matthew J LaVoie; Beth L Ostaszewski; Dennis J Selkoe; Michael S Wolfe
Journal:  J Biol Chem       Date:  2005-10-19       Impact factor: 5.157

5.  Adenovirus IVa2 protein binds ATP.

Authors:  Philomena Ostapchuk; Patrick Hearing
Journal:  J Virol       Date:  2008-07-30       Impact factor: 5.103

6.  Amino acid activation and polymerization at modular multienzymes in nonribosomal peptide biosynthesis.

Authors:  T Stein; J Vater
Journal:  Amino Acids       Date:  1996-09       Impact factor: 3.520

7.  Characterization of Empty adenovirus particles assembled in the absence of a functional adenovirus IVa2 protein.

Authors:  Philomena Ostapchuk; Matthew Almond; Patrick Hearing
Journal:  J Virol       Date:  2011-03-30       Impact factor: 5.103

Review 8.  Molecular switch of F0F1-ATP synthase, G-protein, and other ATP-driven enzymes.

Authors:  H Noji; T Amano; M Yoshida
Journal:  J Bioenerg Biomembr       Date:  1996-10       Impact factor: 2.945

9.  Negative control of DNA replication by hydrolysis of ATP bound to DnaA protein, the initiator of chromosomal DNA replication in Escherichia coli.

Authors:  T Mizushima; S Nishida; K Kurokawa; T Katayama; T Miki; K Sekimizu
Journal:  EMBO J       Date:  1997-06-16       Impact factor: 11.598

10.  Role of the ATP-binding domain of the human papillomavirus type 11 E1 helicase in E2-dependent binding to the origin.

Authors:  S Titolo; A Pelletier; F Sauvé; K Brault; E Wardrop; P W White; A Amin; M G Cordingley; J Archambault
Journal:  J Virol       Date:  1999-07       Impact factor: 5.103

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