Literature DB >> 7828071

PdbMotif--a tool for the automatic identification and display of motifs in protein structures.

M A Saqi1, R Sayle.   

Abstract

A program PdbMotif, which automatically identifies protein motifs in a protein data bank file and generates a script file which can be read directly by the molecular rendering program RasMol, is described. PdbMotif accepts the standard PROSITE pattern syntax and will scan the PROSITE pattern database or a set of user defined patterns. Any motifs detected are automatically highlighted in the RasMol image.

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Year:  1994        PMID: 7828071     DOI: 10.1093/bioinformatics/10.5.545

Source DB:  PubMed          Journal:  Comput Appl Biosci        ISSN: 0266-7061


  4 in total

1.  Motif3D: Relating protein sequence motifs to 3D structure.

Authors:  Anna Gaulton; Teresa K Attwood
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

2.  Role of residues 104, 164, 166, 238 and 240 in the substrate profile of PER-1 beta-lactamase hydrolysing third-generation cephalosporins.

Authors:  A T Bouthors; N Dagoneau-Blanchard; T Naas; P Nordmann; V Jarlier; W Sougakoff
Journal:  Biochem J       Date:  1998-03-15       Impact factor: 3.857

3.  ProKware: integrated software for presenting protein structural properties in protein tertiary structures.

Authors:  Jui-Hung Hung; Hsien-Da Huang; Tzong-Yi Lee
Journal:  Nucleic Acids Res       Date:  2006-07-01       Impact factor: 16.971

4.  Crystal structure of the superantigen staphylococcal enterotoxin type A.

Authors:  E M Schad; I Zaitseva; V N Zaitsev; M Dohlsten; T Kalland; P M Schlievert; D H Ohlendorf; L A Svensson
Journal:  EMBO J       Date:  1995-07-17       Impact factor: 11.598

  4 in total

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