Literature DB >> 7819238

Modification of the electrostatic environment is tolerated in the oxyanion hole of the cysteine protease papain.

R Ménard1, C Plouffe, P Laflamme, T Vernet, D C Tessier, D Y Thomas, A C Storer.   

Abstract

The oxyanion hole in cysteine and serine proteases can be viewed as an arrangement of prealigned dipoles that complements the changes in charge distribution during the enzymatic reaction. Because of the electrostatic nature of the interaction involved in the oxyanion hole, the introduction of charged residues in that region could have a major effect on the catalytic properties of the enzyme. In this study, residue Gln19, which contributes to one of the hydrogen bonds in the oxyanion hole of papain, has been replaced by glutamic acid, histidine, and asparagine residues. These mutations result in 65-315-fold decreases in kcat/KM, supporting our previous finding that the side chain of Gln19 contributes to transition state stabilization in the oxyanion hole of papain (Ménard et al., 1991a). Since papain is active over a wide range of pH values, the influence of side chain ionization on activity could be measured quantitatively with the mutant Gln19Glu. The pH dependency of kcat/KM for Gln19Glu is not of the classical bell-shaped form normally observed for papain, but instead is modulated by ionization of the Glu19 side chain with a pKa of 6.02. The Gln19Glu mutant at low pH, where the Glu19 side chain is neutral, is the enzyme that displays activity closest to that of wild-type enzyme, with a (kcat/KM)1lim value only 20-fold lower than that for papain. As expected, the activity of the Gln19Glu mutant decreases when the Glu19 side chain ionizes. However, introduction of the negatively charged glutamate into the oxyanion hole of papain leads to a further reduction in activity of only 12-fold, and this mutant is still more active than the Gln19Ser enzyme and only 3-fold less active than Gln19Asn.(ABSTRACT TRUNCATED AT 250 WORDS)

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Year:  1995        PMID: 7819238     DOI: 10.1021/bi00002a010

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  12 in total

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Authors:  David A Boudreaux; Joseph Chaney; Tushar K Maiti; Chittaranjan Das
Journal:  FEBS J       Date:  2012-02-27       Impact factor: 5.542

2.  Crystal structure of a Josephin-ubiquitin complex: evolutionary restraints on ataxin-3 deubiquitinating activity.

Authors:  Stephen D Weeks; Kimberly C Grasty; Lisa Hernandez-Cuebas; Patrick J Loll
Journal:  J Biol Chem       Date:  2010-11-30       Impact factor: 5.157

3.  Analysis of the mechanism of the Serratia nuclease using site-directed mutagenesis.

Authors:  P Friedhoff; B Kolmes; O Gimadutdinow; W Wende; K L Krause; A Pingoud
Journal:  Nucleic Acids Res       Date:  1996-07-15       Impact factor: 16.971

4.  OXA-198, an acquired carbapenem-hydrolyzing class D beta-lactamase from Pseudomonas aeruginosa.

Authors:  Farid El Garch; Pierre Bogaerts; Carine Bebrone; Moreno Galleni; Youri Glupczynski
Journal:  Antimicrob Agents Chemother       Date:  2011-07-25       Impact factor: 5.191

5.  Interaction of aspartic acid-104 and proline-287 with the active site of m-calpain.

Authors:  J S Arthur; J S Elce
Journal:  Biochem J       Date:  1996-10-15       Impact factor: 3.857

6.  Is strong hydrogen bonding in the transition state enough to account for the observed rate acceleration in a mutant of papain?

Authors:  Y J Zheng; T C Bruice
Journal:  Proc Natl Acad Sci U S A       Date:  1997-04-29       Impact factor: 11.205

7.  Glycerol-3-Phosphate Dehydrogenase: The K120 and K204 Side Chains Define an Oxyanion Hole at the Enzyme Active Site.

Authors:  Judith R Cristobal; John P Richard
Journal:  Biochemistry       Date:  2022-05-03       Impact factor: 3.321

8.  Role of alphaArg145 and betaArg263 in the active site of penicillin acylase of Escherichia coli.

Authors:  Wynand B L Alkema; Antoon K Prins; Erik de Vries; Dick B Janssen
Journal:  Biochem J       Date:  2002-07-01       Impact factor: 3.857

9.  An Unusual Member of the Papain Superfamily: Mapping the Catalytic Cleft of the Marasmius oreades agglutinin (MOA) with a Caspase Inhibitor.

Authors:  Gabriele Cordara; André van Eerde; Elin M Grahn; Harry C Winter; Irwin J Goldstein; Ute Krengel
Journal:  PLoS One       Date:  2016-02-22       Impact factor: 3.240

10.  Sequence analysis and structure prediction of type II Pseudomonas sp. USM 4-55 PHA synthase and an insight into its catalytic mechanism.

Authors:  Habibah A Wahab; Nurul Bahiyah Ahmad Khairudin; Mohd Razip Samian; Nazalan Najimudin
Journal:  BMC Struct Biol       Date:  2006-11-01
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