Literature DB >> 7812157

Differential deuterium isotope shifts and one-bond 1H-13C scalar couplings in the conformational analysis of protein glycine residues.

D M LeMaster1, J C LaIuppa, D M Kushlan.   

Abstract

The one-bond deuterium isotope shift effect for glycine C alpha resonances exhibits a conformational dependence comparable to that of the corresponding 1JHC scalar coupling in both magnitude (approximately 11 Hz at 14.1 T) and dihedral angle dependence. The similarity in the conformational dependence of the 1JHC and deuterium isotope shift values suggests a common physical basis. Given the known distribution of (phi, psi) main-chain dihedral angles for glycine residues, the deuterium isotope shifts and the 1JHC scalar couplings can determine conformations in the left- and right-handed helical-to-bridge regions of the (phi, psi) plane to an accuracy of approximately 13 degrees. In the absence of stereochemical assignments, the differential deuterium isotope shifts and the 1JHC scalar couplings can be combined with limited independent structural information (e.g., the sign of phi) to determine the chirality of the deuterium substitution.

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Year:  1994        PMID: 7812157     DOI: 10.1007/bf00398415

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  7 in total

1.  The Protein Data Bank: a computer-based archival file for macromolecular structures.

Authors:  F C Bernstein; T F Koetzle; G J Williams; E F Meyer; M D Brice; J R Rodgers; O Kennard; T Shimanouchi; M Tasumi
Journal:  J Mol Biol       Date:  1977-05-25       Impact factor: 5.469

2.  The crystal structure of the ternary complex of staphylococcal nuclease, Ca2+, and the inhibitor pdTp, refined at 1.65 A.

Authors:  P J Loll; E E Lattman
Journal:  Proteins       Date:  1989

Review 3.  Conformation of polypeptides and proteins.

Authors:  G N Ramachandran; V Sasisekharan
Journal:  Adv Protein Chem       Date:  1968

4.  The use of 1JC alpha H alpha coupling constants as a probe for protein backbone conformation.

Authors:  G W Vuister; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1993-01       Impact factor: 2.835

5.  Crystal structure of thioredoxin from Escherichia coli at 1.68 A resolution.

Authors:  S K Katti; D M LeMaster; H Eklund
Journal:  J Mol Biol       Date:  1990-03-05       Impact factor: 5.469

6.  Two-dimensional NMR studies of staphylococcal nuclease. 2. Sequence-specific assignments of carbon-13 and nitrogen-15 signals from the nuclease H124L-thymidine 3',5'-bisphosphate-Ca2+ ternary complex.

Authors:  J F Wang; A P Hinck; S N Loh; J L Markley
Journal:  Biochemistry       Date:  1990-01-09       Impact factor: 3.162

7.  Resolution and sensitivity enhancement of heteronuclear correlation for methylene resonances via 2H enrichment and decoupling.

Authors:  D M Kushlan; D M LeMaster
Journal:  J Biomol NMR       Date:  1993-11       Impact factor: 2.835

  7 in total
  10 in total

1.  Partially-deuterated samples of HET-s(218-289) fibrils: assignment and deuterium isotope effect.

Authors:  Albert A Smith; Francesco Ravotti; Emilie Testori; Riccardo Cadalbert; Matthias Ernst; Anja Böckmann; Beat H Meier
Journal:  J Biomol NMR       Date:  2017-01-10       Impact factor: 2.835

2.  Editing of multidimensional NMR spectra of partially deuterated proteins. Measurement of amide deuterium isotope effects on the chemical shifts of protein backbone nuclei.

Authors:  A Meissner; J Briand; O W Sφrensen
Journal:  J Biomol NMR       Date:  1998-08       Impact factor: 2.835

3.  Accurate measurements of the effects of deuteration at backbone amide positions on the chemical shifts of ¹⁵N, ¹³Cα, ¹³Cβ, ¹³CO and ¹Hα nuclei in proteins.

Authors:  Daoning Zhang; Vitali Tugarinov
Journal:  J Biomol NMR       Date:  2013-04-24       Impact factor: 2.835

Review 4.  Isotope labeling for solution and solid-state NMR spectroscopy of membrane proteins.

Authors:  Raffaello Verardi; Nathaniel J Traaseth; Larry R Masterson; Vitaly V Vostrikov; Gianluigi Veglia
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

5.  Deuterium isotope shifts for backbone ¹H, ¹⁵N and ¹³C nuclei in intrinsically disordered protein α-synuclein.

Authors:  Alexander S Maltsev; Jinfa Ying; Ad Bax
Journal:  J Biomol NMR       Date:  2012-09-08       Impact factor: 2.835

6.  Deuterium isotope effects on 15N backbone chemical shifts in proteins.

Authors:  Jens Abildgaard; Poul Erik Hansen; Marlon N Manalo; Andy LiWang
Journal:  J Biomol NMR       Date:  2009-05-20       Impact factor: 2.835

7.  Hydrogen-bond detection, configuration assignment and rotamer correction of side-chain amides in large proteins by NMR spectroscopy through protium/deuterium isotope effects.

Authors:  Aizhuo Liu; Jifeng Wang; Zhenwei Lu; Lishan Yao; Yue Li; Honggao Yan
Journal:  Chembiochem       Date:  2008-11-24       Impact factor: 3.164

8.  Conditional Disorder in Small Heat-shock Proteins.

Authors:  T Reid Alderson; Jinfa Ying; Ad Bax; Justin L P Benesch; Andrew J Baldwin
Journal:  J Mol Biol       Date:  2020-02-17       Impact factor: 5.469

9.  Biosynthetically directed ²H labelling for stereospecific resonance assignments of glycine methylene groups.

Authors:  Karin V Loscha; Gottfried Otting
Journal:  J Biomol NMR       Date:  2012-11-29       Impact factor: 2.835

10.  Fast and accurate resonance assignment of small-to-large proteins by combining automated and manual approaches.

Authors:  Markus Niklasson; Alexandra Ahlner; Cecilia Andresen; Joseph A Marsh; Patrik Lundström
Journal:  PLoS Comput Biol       Date:  2015-01-08       Impact factor: 4.475

  10 in total

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