Literature DB >> 7803701

Moiety-conserved cycles and metabolic control analysis: problems in sequestration and metabolic channelling.

H M Sauro.   

Abstract

This paper considers certain aspects of the analysis of moiety-conserved cycles in terms of metabolic control analysis. Two response coefficients are discussed: the response coefficient with respect to the total number of moles in a cycle (RVT), and the response coefficient with respect to perturbations to the internal state of a pathway (RVS). The relationship between these two different measures is derived and two examples are given to illustrate how the results may be used to simplify the analysis of particular complex pathways. One example considers how metabolite sequestration affects the flux summation theorem for which the analysis confirms the known result that sequestration can depress the value of the summation to below unity. The second example investigates the effect of metabolic channelling on the summation theorems. The analysis indicates that in contrast to metabolite sequestration, metabolic channelling can cause the flux summation theorem to exceed the value of unity. In addition, the maximum value that the summation theorem can reach under these conditions is shown to be equal to 2. Finally, this analysis indicates how one might use control analysis through the use of enzyme titration to determine whether metabolic channelling occurs in real systems or not.

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Year:  1994        PMID: 7803701     DOI: 10.1016/0303-2647(94)90061-2

Source DB:  PubMed          Journal:  Biosystems        ISSN: 0303-2647            Impact factor:   1.973


  6 in total

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2.  Subtleties in control by metabolic channelling and enzyme organization.

Authors:  B N Kholodenko; J M Rohwer; M Cascante; H V Westerhoff
Journal:  Mol Cell Biochem       Date:  1998-07       Impact factor: 3.396

3.  Effect of channelling on the concentration of bulk-phase intermediates as cytosolic proteins become more concentrated.

Authors:  B N Kholodenko; H V Westerhoff; M Cascante
Journal:  Biochem J       Date:  1996-02-01       Impact factor: 3.857

Review 4.  Network dynamics.

Authors:  Herbert M Sauro
Journal:  Methods Mol Biol       Date:  2009

5.  How molecular competition influences fluxes in gene expression networks.

Authors:  Dirk De Vos; Frank J Bruggeman; Hans V Westerhoff; Barbara M Bakker
Journal:  PLoS One       Date:  2011-12-05       Impact factor: 3.240

6.  Self-replenishment cycles generate a threshold response.

Authors:  Hiroyuki Kurata
Journal:  Sci Rep       Date:  2019-11-20       Impact factor: 4.379

  6 in total

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